miRNA display CGI


Results 21 - 40 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31167 3' -63.8 NC_006560.1 + 8924 0.77 0.121256
Target:  5'- cCGGCGCggggCGCGGggggcuuuuaUGCGCcGCGGGGCGc -3'
miRNA:   3'- -GCCGCGa---GCGCU----------GCGUGuCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 82782 0.77 0.127364
Target:  5'- cCGGCGCccgcgCGCgGGCGCGCGGgagGGGGCGg -3'
miRNA:   3'- -GCCGCGa----GCG-CUGCGUGUCg--CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 16271 0.77 0.129569
Target:  5'- gCGGCGCgCGCggaGACggccgaccccugggGCGCGGCGGGGCGc -3'
miRNA:   3'- -GCCGCGaGCG---CUG--------------CGUGUCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 125144 0.77 0.130524
Target:  5'- aGGCGCUCGUGAgCGaucaCGCGGUGuGGGCGg -3'
miRNA:   3'- gCCGCGAGCGCU-GC----GUGUCGC-CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 57847 0.77 0.133756
Target:  5'- gCGGCGCaCGCGAgCGgGCGGCaGGGGCu -3'
miRNA:   3'- -GCCGCGaGCGCU-GCgUGUCG-CCCCGc -5'
31167 3' -63.8 NC_006560.1 + 4068 0.77 0.133756
Target:  5'- gCGGCGUucUCGCG-CGC-CAGCaGGGGCGc -3'
miRNA:   3'- -GCCGCG--AGCGCuGCGuGUCG-CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 2061 0.77 0.133756
Target:  5'- -aGCGCacgCGCGGCGCgGCGGCGGGGUc -3'
miRNA:   3'- gcCGCGa--GCGCUGCG-UGUCGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 2558 0.76 0.143899
Target:  5'- aCGGCGCggCGCaggucGCGCGCGGCGGGccaGCGg -3'
miRNA:   3'- -GCCGCGa-GCGc----UGCGUGUCGCCC---CGC- -5'
31167 3' -63.8 NC_006560.1 + 18923 0.76 0.151046
Target:  5'- cCGGCGUccgugCGCGGCGUGCcgcGCGGGGCc -3'
miRNA:   3'- -GCCGCGa----GCGCUGCGUGu--CGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 35269 0.76 0.15474
Target:  5'- gCGGcCGC-CGCGcCGgGCGGCGGGGCc -3'
miRNA:   3'- -GCC-GCGaGCGCuGCgUGUCGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 51864 0.76 0.15474
Target:  5'- gGGCGCggCGCGucCGCGCucgggccccgGGCGGGGUGg -3'
miRNA:   3'- gCCGCGa-GCGCu-GCGUG----------UCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 47162 0.76 0.15474
Target:  5'- aGGCGCcgagcUCGCGAgGCGCgAGgGGGGCc -3'
miRNA:   3'- gCCGCG-----AGCGCUgCGUG-UCgCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 9863 0.75 0.162373
Target:  5'- gCGGCGUcCGUGGgGCAcCGGgGGGGCGg -3'
miRNA:   3'- -GCCGCGaGCGCUgCGU-GUCgCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 43856 0.75 0.162373
Target:  5'- gGGCGaCgugCGcCGGCGC-CAGCGGGGCc -3'
miRNA:   3'- gCCGC-Ga--GC-GCUGCGuGUCGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 83652 0.75 0.162373
Target:  5'- uGGCGCgggCGUggGACGCGCAgagcgcggcGCGGGGCu -3'
miRNA:   3'- gCCGCGa--GCG--CUGCGUGU---------CGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 140457 0.75 0.174459
Target:  5'- uCGGgGCUUGCGAuCGCGgcgggcCGGgGGGGCGg -3'
miRNA:   3'- -GCCgCGAGCGCU-GCGU------GUCgCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 34633 0.75 0.174459
Target:  5'- gGGCGCggaggUCGCaccgggGACGCGCGGCGgccGGGCGg -3'
miRNA:   3'- gCCGCG-----AGCG------CUGCGUGUCGC---CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 3940 0.75 0.174459
Target:  5'- gCGGCGC-CGCGGuCG-GCGGCGaGGGCGg -3'
miRNA:   3'- -GCCGCGaGCGCU-GCgUGUCGC-CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 137160 0.75 0.174459
Target:  5'- uGGCGCUCGgGGCGgAgGGCGcggaGGGCGc -3'
miRNA:   3'- gCCGCGAGCgCUGCgUgUCGC----CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 99595 0.75 0.182955
Target:  5'- cCGGCGCUUcccCGGCGCgGCGG-GGGGCGg -3'
miRNA:   3'- -GCCGCGAGc--GCUGCG-UGUCgCCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.