miRNA display CGI


Results 41 - 60 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31167 3' -63.8 NC_006560.1 + 86384 0.66 0.575728
Target:  5'- aCGGUgGC-CGCGACGUggaGGCaGGGCa -3'
miRNA:   3'- -GCCG-CGaGCGCUGCGug-UCGcCCCGc -5'
31167 3' -63.8 NC_006560.1 + 42817 0.66 0.575728
Target:  5'- -cGCGCccccgucucccUCGcCGGCcUugGGCGGGGCGg -3'
miRNA:   3'- gcCGCG-----------AGC-GCUGcGugUCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 45763 0.66 0.575728
Target:  5'- aGGgGUUgGCGugGgGgGGCGcGGGCu -3'
miRNA:   3'- gCCgCGAgCGCugCgUgUCGC-CCCGc -5'
31167 3' -63.8 NC_006560.1 + 83957 0.66 0.575728
Target:  5'- aGGCGCagCcCGACG-ACGGCG-GGCGg -3'
miRNA:   3'- gCCGCGa-GcGCUGCgUGUCGCcCCGC- -5'
31167 3' -63.8 NC_006560.1 + 103116 0.66 0.574772
Target:  5'- gCGGCGgaCGCGG-GgGCGGCGcgcccccGGGCGc -3'
miRNA:   3'- -GCCGCgaGCGCUgCgUGUCGC-------CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 129597 0.66 0.569999
Target:  5'- gCGGUGCggcgCGUGACGgacgcccuaagcggcCGCcccgccGGCGGGGCc -3'
miRNA:   3'- -GCCGCGa---GCGCUGC---------------GUG------UCGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 66049 0.66 0.566188
Target:  5'- uCGGCGUU-GCGAUucggGgGCGGgGGGGCc -3'
miRNA:   3'- -GCCGCGAgCGCUG----CgUGUCgCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 149206 0.66 0.566188
Target:  5'- uGGCGg-CGagGGgGCGCGGCccGGGGCGg -3'
miRNA:   3'- gCCGCgaGCg-CUgCGUGUCG--CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 65841 0.66 0.566188
Target:  5'- -aGCGCUcCGUGugcCGCauGCAGCGGGGg- -3'
miRNA:   3'- gcCGCGA-GCGCu--GCG--UGUCGCCCCgc -5'
31167 3' -63.8 NC_006560.1 + 139044 0.66 0.566188
Target:  5'- gGGgGCUCGCGGugucccggccCGUGCcgGGCccgGGGGCGc -3'
miRNA:   3'- gCCgCGAGCGCU----------GCGUG--UCG---CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 54919 0.66 0.566188
Target:  5'- aGGCGCUCG-GGgGC----CGGGGCGg -3'
miRNA:   3'- gCCGCGAGCgCUgCGugucGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 150002 0.66 0.566188
Target:  5'- -cGCGCUCgggaccgcggGCGGCGCACcccgaccgacGGC-GGGCGa -3'
miRNA:   3'- gcCGCGAG----------CGCUGCGUG----------UCGcCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 56371 0.66 0.566188
Target:  5'- uCGGCcuCUCGCG-CGCGgGGCcGGGGa- -3'
miRNA:   3'- -GCCGc-GAGCGCuGCGUgUCG-CCCCgc -5'
31167 3' -63.8 NC_006560.1 + 123274 0.66 0.566188
Target:  5'- gGGCaGUUCuGCGuCGCGCAGCcgccgccccGGGGUu -3'
miRNA:   3'- gCCG-CGAG-CGCuGCGUGUCG---------CCCCGc -5'
31167 3' -63.8 NC_006560.1 + 45253 0.66 0.566188
Target:  5'- gGGCGUcUGUGGCGCgu-GCGGGGg- -3'
miRNA:   3'- gCCGCGaGCGCUGCGuguCGCCCCgc -5'
31167 3' -63.8 NC_006560.1 + 11912 0.66 0.566188
Target:  5'- aCGGCGUcCGCGAagcCGCgggcccGCAGgaGGGGCc -3'
miRNA:   3'- -GCCGCGaGCGCU---GCG------UGUCg-CCCCGc -5'
31167 3' -63.8 NC_006560.1 + 136076 0.66 0.566188
Target:  5'- gGGCagccucacgcgGCUgGCGGCGUucacGCA-CGGGGCGc -3'
miRNA:   3'- gCCG-----------CGAgCGCUGCG----UGUcGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 16536 0.66 0.565236
Target:  5'- gCGGCGCUggggCGCcGCGCGCcaucgaaGGUGaGGGCc -3'
miRNA:   3'- -GCCGCGA----GCGcUGCGUG-------UCGC-CCCGc -5'
31167 3' -63.8 NC_006560.1 + 138798 0.66 0.563334
Target:  5'- aGGCGggUG-GACGUGCGGCgccuggggaccaccGGGGCGa -3'
miRNA:   3'- gCCGCgaGCgCUGCGUGUCG--------------CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 107438 0.66 0.560483
Target:  5'- uGGCGUucgacacccugccccUCGCGAC-CGuCGGCccgGGGGCGc -3'
miRNA:   3'- gCCGCG---------------AGCGCUGcGU-GUCG---CCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.