miRNA display CGI


Results 21 - 40 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31167 3' -63.8 NC_006560.1 + 3221 0.68 0.439024
Target:  5'- gGGCgGCg-GCGGCGgGCGGCGgcguguGGGCGg -3'
miRNA:   3'- gCCG-CGagCGCUGCgUGUCGC------CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 3258 0.68 0.455383
Target:  5'- gGGCgGCgCGCGGCGC-CAGCcgccgcgGGGGuCGg -3'
miRNA:   3'- gCCG-CGaGCGCUGCGuGUCG-------CCCC-GC- -5'
31167 3' -63.8 NC_006560.1 + 3361 0.68 0.465003
Target:  5'- uCGGCGUcggCGuCGGCGgGCgggcgGGCGGGcGCGg -3'
miRNA:   3'- -GCCGCGa--GC-GCUGCgUG-----UCGCCC-CGC- -5'
31167 3' -63.8 NC_006560.1 + 3427 0.69 0.381803
Target:  5'- gCGGCGggCGCgGGCGC-CcGCGgGGGCGa -3'
miRNA:   3'- -GCCGCgaGCG-CUGCGuGuCGC-CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 3464 0.67 0.49176
Target:  5'- -uGCGCUUGCGGgcCGCGCGgGCGGcgucGGCGn -3'
miRNA:   3'- gcCGCGAGCGCU--GCGUGU-CGCC----CCGC- -5'
31167 3' -63.8 NC_006560.1 + 3496 0.73 0.247494
Target:  5'- uCGGCGUcgGCGGCGUcCAGCagGGGGCGc -3'
miRNA:   3'- -GCCGCGagCGCUGCGuGUCG--CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 3559 0.66 0.585304
Target:  5'- gCGGCGC-CGaCGgaGCGCACcugccGCGGGcuGCGg -3'
miRNA:   3'- -GCCGCGaGC-GC--UGCGUGu----CGCCC--CGC- -5'
31167 3' -63.8 NC_006560.1 + 3610 0.71 0.300497
Target:  5'- gCGGCGC-CgGCGacgaggcccacggcGCGCACGGCGGcgacGGCGg -3'
miRNA:   3'- -GCCGCGaG-CGC--------------UGCGUGUCGCC----CCGC- -5'
31167 3' -63.8 NC_006560.1 + 3752 0.78 0.112603
Target:  5'- gCGGCGCgggCGCGGCggcgccGCGCGGCGGGaccGCGg -3'
miRNA:   3'- -GCCGCGa--GCGCUG------CGUGUCGCCC---CGC- -5'
31167 3' -63.8 NC_006560.1 + 3788 0.69 0.381803
Target:  5'- nGGCGCgCGCGGcCGC-CAGCccGGGCa -3'
miRNA:   3'- gCCGCGaGCGCU-GCGuGUCGc-CCCGc -5'
31167 3' -63.8 NC_006560.1 + 3889 0.68 0.482759
Target:  5'- gCGGCGUcgGCGGCGUcgGCGGCGucGGCGu -3'
miRNA:   3'- -GCCGCGagCGCUGCG--UGUCGCc-CCGC- -5'
31167 3' -63.8 NC_006560.1 + 3940 0.75 0.174459
Target:  5'- gCGGCGC-CGCGGuCG-GCGGCGaGGGCGg -3'
miRNA:   3'- -GCCGCGaGCGCU-GCgUGUCGC-CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 3975 0.73 0.231097
Target:  5'- gCGGCGCUgCGCGGCGaCACGcccGCGGcgccguagccGGCGa -3'
miRNA:   3'- -GCCGCGA-GCGCUGC-GUGU---CGCC----------CCGC- -5'
31167 3' -63.8 NC_006560.1 + 4068 0.77 0.133756
Target:  5'- gCGGCGUucUCGCG-CGC-CAGCaGGGGCGc -3'
miRNA:   3'- -GCCGCG--AGCGCuGCGuGUCG-CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 4148 0.72 0.258952
Target:  5'- gCGGCgGCUCaUGGC-CACGGCGGcGGCGg -3'
miRNA:   3'- -GCCG-CGAGcGCUGcGUGUCGCC-CCGC- -5'
31167 3' -63.8 NC_006560.1 + 4383 0.68 0.447592
Target:  5'- aGGCGCgugaugagggCGUacuGGCGCGCGGCGucgcccagcucGGGCGc -3'
miRNA:   3'- gCCGCGa---------GCG---CUGCGUGUCGC-----------CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 4715 0.78 0.109577
Target:  5'- gCGGCGCUCGCuGCGCcCGGCGGcgacgcccgucucGGCGg -3'
miRNA:   3'- -GCCGCGAGCGcUGCGuGUCGCC-------------CCGC- -5'
31167 3' -63.8 NC_006560.1 + 4753 0.69 0.422172
Target:  5'- nGGCgGCcCGCGGCG-GCGGCGGcGCGg -3'
miRNA:   3'- gCCG-CGaGCGCUGCgUGUCGCCcCGC- -5'
31167 3' -63.8 NC_006560.1 + 4851 0.73 0.231097
Target:  5'- aCGGCGCcggcggcgagguUCGCGuCG-ACGGCGGcGGCGg -3'
miRNA:   3'- -GCCGCG------------AGCGCuGCgUGUCGCC-CCGC- -5'
31167 3' -63.8 NC_006560.1 + 5084 0.72 0.27084
Target:  5'- cCGGCGU--GCGGCGCGCcgcccggggucGGCGgGGGCGc -3'
miRNA:   3'- -GCCGCGagCGCUGCGUG-----------UCGC-CCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.