miRNA display CGI


Results 1 - 20 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31167 3' -63.8 NC_006560.1 + 4 0.66 0.556689
Target:  5'- -cGCGC-CGCGuuuCcCGGCGGGGCGg -3'
miRNA:   3'- gcCGCGaGCGCugcGuGUCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 113 0.66 0.585304
Target:  5'- gCGGcCGCggccggCGCGGguUugGGCGGGGCc -3'
miRNA:   3'- -GCC-GCGa-----GCGCUgcGugUCGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 670 0.68 0.462369
Target:  5'- cCGGCGCgccCGCGGCGCGgGcucgucGCGGGccccguccccccccGCGg -3'
miRNA:   3'- -GCCGCGa--GCGCUGCGUgU------CGCCC--------------CGC- -5'
31167 3' -63.8 NC_006560.1 + 1052 0.68 0.439024
Target:  5'- uGGCGCUcgucuucuaCGCGGC-CGCcGaCGGGGCa -3'
miRNA:   3'- gCCGCGA---------GCGCUGcGUGuC-GCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 1110 0.69 0.388878
Target:  5'- gCGGCGCgagcccCGCGACGCGCcccccuccggcccGGCcuccGGGGUu -3'
miRNA:   3'- -GCCGCGa-----GCGCUGCGUG-------------UCG----CCCCGc -5'
31167 3' -63.8 NC_006560.1 + 1490 0.67 0.52849
Target:  5'- aGGCGC--GCGgcccACGC-CGGCGGGaGCGc -3'
miRNA:   3'- gCCGCGagCGC----UGCGuGUCGCCC-CGC- -5'
31167 3' -63.8 NC_006560.1 + 1615 0.71 0.322781
Target:  5'- gCGcGCGCUCuGCGGgcuuCGCGCcugucuguGGCGGGGCc -3'
miRNA:   3'- -GC-CGCGAG-CGCU----GCGUG--------UCGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 1980 0.66 0.547236
Target:  5'- gCGGgGCUCGgGGCcggGC-CAGCuccaGGGCGg -3'
miRNA:   3'- -GCCgCGAGCgCUG---CGuGUCGc---CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 2061 0.77 0.133756
Target:  5'- -aGCGCacgCGCGGCGCgGCGGCGGGGUc -3'
miRNA:   3'- gcCGCGa--GCGCUGCG-UGUCGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 2102 0.68 0.456253
Target:  5'- uCGGCGCgcagcacgaGCGGCGCGgCGuCGGGGUc -3'
miRNA:   3'- -GCCGCGag-------CGCUGCGU-GUcGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 2148 0.78 0.109849
Target:  5'- gGGCGCgcgCGCagaaGGCGCGCAGCGcGGCGg -3'
miRNA:   3'- gCCGCGa--GCG----CUGCGUGUCGCcCCGC- -5'
31167 3' -63.8 NC_006560.1 + 2195 0.67 0.519206
Target:  5'- cCGGCGCgCGCGGcCGCGCgguccAGCGccagguagacGGGCc -3'
miRNA:   3'- -GCCGCGaGCGCU-GCGUG-----UCGC----------CCCGc -5'
31167 3' -63.8 NC_006560.1 + 2293 0.66 0.575728
Target:  5'- gCGGCGgaagUCG-GGCGCGcCGGCGGcGGCc -3'
miRNA:   3'- -GCCGCg---AGCgCUGCGU-GUCGCC-CCGc -5'
31167 3' -63.8 NC_006560.1 + 2372 0.73 0.215626
Target:  5'- aCGGCGCggcgguacucgCGCGGCG-GCAGCGGcacGGCGg -3'
miRNA:   3'- -GCCGCGa----------GCGCUGCgUGUCGCC---CCGC- -5'
31167 3' -63.8 NC_006560.1 + 2465 0.71 0.322781
Target:  5'- aGGCGCg-GCGGCgGCGCGuCGGGGUa -3'
miRNA:   3'- gCCGCGagCGCUG-CGUGUcGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 2558 0.76 0.143899
Target:  5'- aCGGCGCggCGCaggucGCGCGCGGCGGGccaGCGg -3'
miRNA:   3'- -GCCGCGa-GCGc----UGCGUGUCGCCC---CGC- -5'
31167 3' -63.8 NC_006560.1 + 2641 0.66 0.59491
Target:  5'- gCGGCGCgCGaCGACGgGCccgucGGCGggccacuccucGGGCGg -3'
miRNA:   3'- -GCCGCGaGC-GCUGCgUG-----UCGC-----------CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 2687 0.68 0.43055
Target:  5'- aCGGCGUccaCGaCGACGagGCGGCGGccGGCGg -3'
miRNA:   3'- -GCCGCGa--GC-GCUGCg-UGUCGCC--CCGC- -5'
31167 3' -63.8 NC_006560.1 + 2900 0.72 0.253169
Target:  5'- aGGcCGCcgcgCGCGGCGguCcaggcgGGCGGGGCGg -3'
miRNA:   3'- gCC-GCGa---GCGCUGCguG------UCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 3013 0.69 0.39764
Target:  5'- uGGCGCaUCcaggcgGCGGCGCggcGCAGCGGGcccgaggcGCGg -3'
miRNA:   3'- gCCGCG-AG------CGCUGCG---UGUCGCCC--------CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.