miRNA display CGI


Results 1 - 20 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31167 3' -63.8 NC_006560.1 + 15034 0.65 0.602613
Target:  5'- gCGGCGUcggagacUCGCGccggggggcgacgGCGuCGguGgGGGGCGg -3'
miRNA:   3'- -GCCGCG-------AGCGC-------------UGC-GUguCgCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 119609 0.65 0.603577
Target:  5'- gCGGgGCcCGagggcccCGACG-GCGGCGGGGCc -3'
miRNA:   3'- -GCCgCGaGC-------GCUGCgUGUCGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 118569 0.65 0.600686
Target:  5'- cCGGCGCUCG-GucuCGCuggucccGCGGCaccacuacgcgaccGGGGCGc -3'
miRNA:   3'- -GCCGCGAGCgCu--GCG-------UGUCG--------------CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 27106 0.65 0.60165
Target:  5'- gGGC-CUCGCGACccggccuccaccgaGaCGCAGUuGGGGCc -3'
miRNA:   3'- gCCGcGAGCGCUG--------------C-GUGUCG-CCCCGc -5'
31167 3' -63.8 NC_006560.1 + 57676 0.66 0.556689
Target:  5'- aGGCGCgccCGCcGCGCGUGGgugGGGGCGa -3'
miRNA:   3'- gCCGCGa--GCGcUGCGUGUCg--CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 143588 0.66 0.547236
Target:  5'- gGGgGUUCGCGA-GCGagaGGCGuGGCGg -3'
miRNA:   3'- gCCgCGAGCGCUgCGUg--UCGCcCCGC- -5'
31167 3' -63.8 NC_006560.1 + 121716 0.66 0.556689
Target:  5'- aGcGCGuCUC-CGGCGgGCAGCccggcgGGGGCGu -3'
miRNA:   3'- gC-CGC-GAGcGCUGCgUGUCG------CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 66915 0.66 0.547236
Target:  5'- uCGGCGC-CGcCGucCGcCGCGGCccccgccccGGGGCGg -3'
miRNA:   3'- -GCCGCGaGC-GCu-GC-GUGUCG---------CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 16599 0.66 0.547236
Target:  5'- aGGUucaGCUUGUaguaGCGCGuccaGGCGGGGCGg -3'
miRNA:   3'- gCCG---CGAGCGc---UGCGUg---UCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 34571 0.66 0.546294
Target:  5'- gGGgGUgCGCGACGgGgagagacCGGCGGGGgGg -3'
miRNA:   3'- gCCgCGaGCGCUGCgU-------GUCGCCCCgC- -5'
31167 3' -63.8 NC_006560.1 + 26821 0.66 0.547236
Target:  5'- gGGCGCgcggGgGACGC-CGGggaccCGGGGCGc -3'
miRNA:   3'- gCCGCGag--CgCUGCGuGUC-----GCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 39233 0.66 0.556689
Target:  5'- gGGCGaC-CGCGAgCGCcauCAGCGaGGGgGg -3'
miRNA:   3'- gCCGC-GaGCGCU-GCGu--GUCGC-CCCgC- -5'
31167 3' -63.8 NC_006560.1 + 58833 0.66 0.547236
Target:  5'- aGGCGCa-GC--UGCACGuCGGGGCGg -3'
miRNA:   3'- gCCGCGagCGcuGCGUGUcGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 76590 0.66 0.547236
Target:  5'- gGGCGCcUG-GACGCGCucGGCGaGGCGu -3'
miRNA:   3'- gCCGCGaGCgCUGCGUG--UCGCcCCGC- -5'
31167 3' -63.8 NC_006560.1 + 102519 0.66 0.547236
Target:  5'- gCGGCGCUCGaucuccacCGGCaGCuCGGCGGccugcgcgacGGCGu -3'
miRNA:   3'- -GCCGCGAGC--------GCUG-CGuGUCGCC----------CCGC- -5'
31167 3' -63.8 NC_006560.1 + 1980 0.66 0.547236
Target:  5'- gCGGgGCUCGgGGCcggGC-CAGCuccaGGGCGg -3'
miRNA:   3'- -GCCgCGAGCgCUG---CGuGUCGc---CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 25108 0.66 0.556689
Target:  5'- aGGCGCacucgcacCGCGccuGCGCGCGcUGGGGCc -3'
miRNA:   3'- gCCGCGa-------GCGC---UGCGUGUcGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 74096 0.66 0.553848
Target:  5'- gCGGCcugGCUgGCGuCGCugGGCgacgccgcgggccaGGGGCu -3'
miRNA:   3'- -GCCG---CGAgCGCuGCGugUCG--------------CCCCGc -5'
31167 3' -63.8 NC_006560.1 + 26367 0.66 0.547236
Target:  5'- gCGGgGCggaGaCGGCGCccCGGcCGGGGCGc -3'
miRNA:   3'- -GCCgCGag-C-GCUGCGu-GUC-GCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 105847 0.66 0.547236
Target:  5'- -cGCGCUCGUG-CGCGCGcGCuacGGGCu -3'
miRNA:   3'- gcCGCGAGCGCuGCGUGU-CGc--CCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.