miRNA display CGI


Results 1 - 20 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31167 3' -63.8 NC_006560.1 + 119609 0.65 0.603577
Target:  5'- gCGGgGCcCGagggcccCGACG-GCGGCGGGGCc -3'
miRNA:   3'- -GCCgCGaGC-------GCUGCgUGUCGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 2148 0.78 0.109849
Target:  5'- gGGCGCgcgCGCagaaGGCGCGCAGCGcGGCGg -3'
miRNA:   3'- gCCGCGa--GCG----CUGCGUGUCGCcCCGC- -5'
31167 3' -63.8 NC_006560.1 + 3752 0.78 0.112603
Target:  5'- gCGGCGCgggCGCGGCggcgccGCGCGGCGGGaccGCGg -3'
miRNA:   3'- -GCCGCGa--GCGCUG------CGUGUCGCCC---CGC- -5'
31167 3' -63.8 NC_006560.1 + 27178 0.78 0.115137
Target:  5'- gCGGCGCgcgCGCGgaaaaaaACGC-CGGCGGGGCc -3'
miRNA:   3'- -GCCGCGa--GCGC-------UGCGuGUCGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 102861 0.78 0.115421
Target:  5'- uGGCGagcCG-GGCGCGCGGCGGGGUGg -3'
miRNA:   3'- gCCGCga-GCgCUGCGUGUCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 54947 0.78 0.115421
Target:  5'- uCGGgGCUCGCG-CGCcgGCGGCGGGGg- -3'
miRNA:   3'- -GCCgCGAGCGCuGCG--UGUCGCCCCgc -5'
31167 3' -63.8 NC_006560.1 + 134765 0.77 0.118305
Target:  5'- aGGCGCgcgccagCGCG-CGCAgGGuCGGGGCGg -3'
miRNA:   3'- gCCGCGa------GCGCuGCGUgUC-GCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 85245 0.77 0.118305
Target:  5'- cCGGCGCcCGCGGCGCggaagccggcGCuGCGGaGGCGg -3'
miRNA:   3'- -GCCGCGaGCGCUGCG----------UGuCGCC-CCGC- -5'
31167 3' -63.8 NC_006560.1 + 8924 0.77 0.121256
Target:  5'- cCGGCGCggggCGCGGggggcuuuuaUGCGCcGCGGGGCGc -3'
miRNA:   3'- -GCCGCGa---GCGCU----------GCGUGuCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 52395 0.78 0.109849
Target:  5'- cCGGCGCcgcgCGCGcCGCGCAGCuGGcGGCGc -3'
miRNA:   3'- -GCCGCGa---GCGCuGCGUGUCG-CC-CCGC- -5'
31167 3' -63.8 NC_006560.1 + 4715 0.78 0.109577
Target:  5'- gCGGCGCUCGCuGCGCcCGGCGGcgacgcccgucucGGCGg -3'
miRNA:   3'- -GCCGCGAGCGcUGCGuGUCGCC-------------CCGC- -5'
31167 3' -63.8 NC_006560.1 + 112547 0.78 0.107159
Target:  5'- uGGCGCcCGCGACGguCGccgccguccGCGGGGCGu -3'
miRNA:   3'- gCCGCGaGCGCUGCguGU---------CGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 131856 0.82 0.052859
Target:  5'- gCGGCGa-CGCGGCGCGCGcuGCGGGGCGc -3'
miRNA:   3'- -GCCGCgaGCGCUGCGUGU--CGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 132319 0.82 0.05563
Target:  5'- gCGGCGCggcCGgGGCGCACGcggucGCGGGGCGg -3'
miRNA:   3'- -GCCGCGa--GCgCUGCGUGU-----CGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 132039 0.81 0.064817
Target:  5'- cCGGcCGC-CGCGcUGCGCGGCGGGGCGc -3'
miRNA:   3'- -GCC-GCGaGCGCuGCGUGUCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 105031 0.8 0.073575
Target:  5'- gGGCGCUcCGCGGCGcCGCcGCGGGGgGg -3'
miRNA:   3'- gCCGCGA-GCGCUGC-GUGuCGCCCCgC- -5'
31167 3' -63.8 NC_006560.1 + 31836 0.8 0.083463
Target:  5'- uGGgGCUcgccgCGCGACGCGCGGgGGGGCc -3'
miRNA:   3'- gCCgCGA-----GCGCUGCGUGUCgCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 124134 0.79 0.085588
Target:  5'- aCGGCG-UCGCGGCGC-CGGCGGGGg- -3'
miRNA:   3'- -GCCGCgAGCGCUGCGuGUCGCCCCgc -5'
31167 3' -63.8 NC_006560.1 + 115435 0.78 0.099454
Target:  5'- uCGGCGCUCGCgcgcgagaucGugGCGCGGCuGGuGGCGc -3'
miRNA:   3'- -GCCGCGAGCG----------CugCGUGUCG-CC-CCGC- -5'
31167 3' -63.8 NC_006560.1 + 27604 0.78 0.101962
Target:  5'- gGGCGCUCGCGccugcugcccgaGCuCGCGGCGGGcGCGg -3'
miRNA:   3'- gCCGCGAGCGC------------UGcGUGUCGCCC-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.