miRNA display CGI


Results 1 - 20 of 29 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31167 5' -53.6 NC_006560.1 + 10834 0.66 0.969458
Target:  5'- cGUCUCCCCucuu--CcUCGCCAcgCGCg -3'
miRNA:   3'- -CAGAGGGGcaucauGuAGCGGUa-GCG- -5'
31167 5' -53.6 NC_006560.1 + 22182 0.66 0.969458
Target:  5'- cUgUCCCCGccGU-CGgggcCGCCGUCGCc -3'
miRNA:   3'- cAgAGGGGCauCAuGUa---GCGGUAGCG- -5'
31167 5' -53.6 NC_006560.1 + 90285 0.66 0.966351
Target:  5'- -cCUCCUcuucgaggccguCGUGGggccCGUCGCCGUgGCg -3'
miRNA:   3'- caGAGGG------------GCAUCau--GUAGCGGUAgCG- -5'
31167 5' -53.6 NC_006560.1 + 47611 0.66 0.961987
Target:  5'- aUCUCgCCCGaGGUcgcccaggagguggACGUgGCCGuUCGCg -3'
miRNA:   3'- cAGAG-GGGCaUCA--------------UGUAgCGGU-AGCG- -5'
31167 5' -53.6 NC_006560.1 + 19759 0.66 0.959482
Target:  5'- aUCUCCCCGgcGUcCccCGCCcgCaGCa -3'
miRNA:   3'- cAGAGGGGCauCAuGuaGCGGuaG-CG- -5'
31167 5' -53.6 NC_006560.1 + 70058 0.66 0.955709
Target:  5'- -gCUCCgCG-AGcUGCA-CGCCGUCGUg -3'
miRNA:   3'- caGAGGgGCaUC-AUGUaGCGGUAGCG- -5'
31167 5' -53.6 NC_006560.1 + 62504 0.67 0.952115
Target:  5'- uGUCgUCCCCGccgaaaaccccgcuGUugGUCGCC-UUGCg -3'
miRNA:   3'- -CAG-AGGGGCau------------CAugUAGCGGuAGCG- -5'
31167 5' -53.6 NC_006560.1 + 10067 0.67 0.951704
Target:  5'- -cCUCCaugaCGUAGgg-GUCGUCGUCGUg -3'
miRNA:   3'- caGAGGg---GCAUCaugUAGCGGUAGCG- -5'
31167 5' -53.6 NC_006560.1 + 130583 0.67 0.947464
Target:  5'- cUCgCCCUGgcGgcgcACGUCGCCG-CGCg -3'
miRNA:   3'- cAGaGGGGCauCa---UGUAGCGGUaGCG- -5'
31167 5' -53.6 NC_006560.1 + 96055 0.67 0.942985
Target:  5'- -cCUCCCCGUccu-CcUCGCCcUCGCc -3'
miRNA:   3'- caGAGGGGCAucauGuAGCGGuAGCG- -5'
31167 5' -53.6 NC_006560.1 + 119411 0.67 0.942985
Target:  5'- gGUCuUCCCCGgcG-GCuUCGCguUCGCc -3'
miRNA:   3'- -CAG-AGGGGCauCaUGuAGCGguAGCG- -5'
31167 5' -53.6 NC_006560.1 + 6049 0.67 0.942524
Target:  5'- -cCUCUCUGUGGagccucguuaGCAUCGCCGcgcccgcUCGCg -3'
miRNA:   3'- caGAGGGGCAUCa---------UGUAGCGGU-------AGCG- -5'
31167 5' -53.6 NC_006560.1 + 78797 0.67 0.938264
Target:  5'- uGUC-CCCCGgcGUGgAgguucUCGCCGggcUCGCc -3'
miRNA:   3'- -CAGaGGGGCauCAUgU-----AGCGGU---AGCG- -5'
31167 5' -53.6 NC_006560.1 + 115805 0.67 0.938264
Target:  5'- -cCUgCCCGU-GUACGaggCGCuCGUCGCc -3'
miRNA:   3'- caGAgGGGCAuCAUGUa--GCG-GUAGCG- -5'
31167 5' -53.6 NC_006560.1 + 41513 0.67 0.935315
Target:  5'- cGUCUCCCCcacucccaGUCGCgCGUCGUa -3'
miRNA:   3'- -CAGAGGGGcaucaug-UAGCG-GUAGCG- -5'
31167 5' -53.6 NC_006560.1 + 71296 0.67 0.93279
Target:  5'- cUCUCCaucgcguCCGUGGUccGCGUCG-UGUCGCg -3'
miRNA:   3'- cAGAGG-------GGCAUCA--UGUAGCgGUAGCG- -5'
31167 5' -53.6 NC_006560.1 + 58984 0.68 0.928092
Target:  5'- cGUCUCCCCGg---AgAUCGUCAUgucgaUGCg -3'
miRNA:   3'- -CAGAGGGGCaucaUgUAGCGGUA-----GCG- -5'
31167 5' -53.6 NC_006560.1 + 50533 0.68 0.928092
Target:  5'- aUCUCCgCGUgggacgagucGGUGCAcgcCGCCAUgGCc -3'
miRNA:   3'- cAGAGGgGCA----------UCAUGUa--GCGGUAgCG- -5'
31167 5' -53.6 NC_006560.1 + 95973 0.68 0.910997
Target:  5'- aGUCgacgCCCgCGUAGUcgcccGCGUagcCGCCcgCGCg -3'
miRNA:   3'- -CAGa---GGG-GCAUCA-----UGUA---GCGGuaGCG- -5'
31167 5' -53.6 NC_006560.1 + 99528 0.69 0.898388
Target:  5'- -cCUCUCCGgggUAGUagGCggCGUCGUCGCg -3'
miRNA:   3'- caGAGGGGC---AUCA--UGuaGCGGUAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.