miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3118 3' -53.3 NC_001493.1 + 73468 0.77 0.471124
Target:  5'- cGCAGGGGGgaccGCgGUGGUCUGGuUCCCg -3'
miRNA:   3'- -CGUUUCCCaaa-CG-CGCUAGGCC-AGGG- -5'
3118 3' -53.3 NC_001493.1 + 87796 0.66 0.959095
Target:  5'- cCGGGGGGcaggucccgGgGUaGAUCCGGUCCUc -3'
miRNA:   3'- cGUUUCCCaaa------CgCG-CUAGGCCAGGG- -5'
3118 3' -53.3 NC_001493.1 + 93314 0.66 0.958724
Target:  5'- cGCGAugguucGGGUgaccGCGCGGaCCGGUgcgcucguaucgaCCCg -3'
miRNA:   3'- -CGUUu-----CCCAaa--CGCGCUaGGCCA-------------GGG- -5'
3118 3' -53.3 NC_001493.1 + 101991 0.66 0.961274
Target:  5'- -gGAAGaGGUUcUGCGCGugcucgagacacCCGGUCCg -3'
miRNA:   3'- cgUUUC-CCAA-ACGCGCua----------GGCCAGGg -5'
3118 3' -53.3 NC_001493.1 + 102451 0.72 0.764791
Target:  5'- uCGGGGGGU---CGCGAcggCCGGUCCUc -3'
miRNA:   3'- cGUUUCCCAaacGCGCUa--GGCCAGGG- -5'
3118 3' -53.3 NC_001493.1 + 107603 0.66 0.972113
Target:  5'- cCGAAGGuug-GCgGCGuugacaCCGGUCCCg -3'
miRNA:   3'- cGUUUCCcaaaCG-CGCua----GGCCAGGG- -5'
3118 3' -53.3 NC_001493.1 + 110862 1.15 0.002095
Target:  5'- gGCAAAGGGUUUGCGCGAUCCGGUCCCg -3'
miRNA:   3'- -CGUUUCCCAAACGCGCUAGGCCAGGG- -5'
3118 3' -53.3 NC_001493.1 + 123296 0.66 0.969184
Target:  5'- cGCAcAGGGagagccgcgGUGCGucuAUCCgagcGGUCCCg -3'
miRNA:   3'- -CGUuUCCCaaa------CGCGC---UAGG----CCAGGG- -5'
3118 3' -53.3 NC_001493.1 + 124642 0.68 0.903811
Target:  5'- cGCGAcccGGGUcuuUUGCGCGGUCaaCGGgagCCg -3'
miRNA:   3'- -CGUUu--CCCA---AACGCGCUAG--GCCa--GGg -5'
3118 3' -53.3 NC_001493.1 + 124714 0.66 0.958724
Target:  5'- gGCGAGGGGggagGcCGUGAUgCGaaccaucgccaccGUCCCg -3'
miRNA:   3'- -CGUUUCCCaaa-C-GCGCUAgGC-------------CAGGG- -5'
3118 3' -53.3 NC_001493.1 + 124890 0.66 0.955279
Target:  5'- cGCGGAGGacGUggaGCGCGuggaCGcGUCCCg -3'
miRNA:   3'- -CGUUUCC--CAaa-CGCGCuag-GC-CAGGG- -5'
3118 3' -53.3 NC_001493.1 + 126324 0.69 0.885732
Target:  5'- cGCGGAGGacccggaucgagccGCGUGGUCaGGUCCCg -3'
miRNA:   3'- -CGUUUCCcaaa----------CGCGCUAGgCCAGGG- -5'
3118 3' -53.3 NC_001493.1 + 126365 0.67 0.951228
Target:  5'- ---cGGGGagcucGCGCGAUCgGGcgcgUCCCg -3'
miRNA:   3'- cguuUCCCaaa--CGCGCUAGgCC----AGGG- -5'
3118 3' -53.3 NC_001493.1 + 126406 0.66 0.966042
Target:  5'- cGCGGccGGUU--CGCGAUCCGGgacUCuCCg -3'
miRNA:   3'- -CGUUucCCAAacGCGCUAGGCC---AG-GG- -5'
3118 3' -53.3 NC_001493.1 + 129088 0.74 0.611971
Target:  5'- gGCAAGGGGg--GaGCGGUCCGGaaCCg -3'
miRNA:   3'- -CGUUUCCCaaaCgCGCUAGGCCagGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.