miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3118 3' -53.3 NC_001493.1 + 7742 0.66 0.969184
Target:  5'- cGCAcAGGGagagccgcgGUGCGucuAUCCgagcGGUCCCg -3'
miRNA:   3'- -CGUuUCCCaaa------CGCGC---UAGG----CCAGGG- -5'
3118 3' -53.3 NC_001493.1 + 9087 0.68 0.903811
Target:  5'- cGCGAcccGGGUcuuUUGCGCGGUCaaCGGgagCCg -3'
miRNA:   3'- -CGUUu--CCCA---AACGCGCUAG--GCCa--GGg -5'
3118 3' -53.3 NC_001493.1 + 9159 0.66 0.961629
Target:  5'- gGCGAGGGGggagGcCGUGAUgCGaaccaucgccacccGUCCCg -3'
miRNA:   3'- -CGUUUCCCaaa-C-GCGCUAgGC--------------CAGGG- -5'
3118 3' -53.3 NC_001493.1 + 9336 0.66 0.955279
Target:  5'- cGCGGAGGacGUggaGCGCGuggaCGcGUCCCg -3'
miRNA:   3'- -CGUUUCC--CAaa-CGCGCuag-GC-CAGGG- -5'
3118 3' -53.3 NC_001493.1 + 10770 0.69 0.885732
Target:  5'- cGCGGAGGacccggaucgagccGCGUGGUCaGGUCCCg -3'
miRNA:   3'- -CGUUUCCcaaa----------CGCGCUAGgCCAGGG- -5'
3118 3' -53.3 NC_001493.1 + 10811 0.67 0.951228
Target:  5'- ---cGGGGagcucGCGCGAUCgGGcgcgUCCCg -3'
miRNA:   3'- cguuUCCCaaa--CGCGCUAGgCC----AGGG- -5'
3118 3' -53.3 NC_001493.1 + 10852 0.66 0.966042
Target:  5'- cGCGGccGGUU--CGCGAUCCGGgacUCuCCg -3'
miRNA:   3'- -CGUUucCCAAacGCGCUAGGCC---AG-GG- -5'
3118 3' -53.3 NC_001493.1 + 13533 0.74 0.611971
Target:  5'- gGCAAGGGGg--GaGCGGUCCGGaaCCg -3'
miRNA:   3'- -CGUUUCCCaaaCgCGCUAGGCCagGG- -5'
3118 3' -53.3 NC_001493.1 + 19753 0.66 0.955279
Target:  5'- cGCGGAGGGUacgcuccCGCGGcaCCGGggaUCCCc -3'
miRNA:   3'- -CGUUUCCCAaac----GCGCUa-GGCC---AGGG- -5'
3118 3' -53.3 NC_001493.1 + 19986 0.67 0.945606
Target:  5'- -gAGAGuGG-UUGCGCaccauGAacaacccgcucuggUCCGGUCCCg -3'
miRNA:   3'- cgUUUC-CCaAACGCG-----CU--------------AGGCCAGGG- -5'
3118 3' -53.3 NC_001493.1 + 23593 0.72 0.725385
Target:  5'- ----cGGGUUgUGCGCGGccUUCGGUCCg -3'
miRNA:   3'- cguuuCCCAA-ACGCGCU--AGGCCAGGg -5'
3118 3' -53.3 NC_001493.1 + 29554 0.72 0.755098
Target:  5'- uGCGAAGGGUggucCGCGAcagUCCGaGcgCCCg -3'
miRNA:   3'- -CGUUUCCCAaac-GCGCU---AGGC-Ca-GGG- -5'
3118 3' -53.3 NC_001493.1 + 31350 0.67 0.942409
Target:  5'- gGCcGAGaGGUggGCGCGGgcgguugcagcgUCCGuucgaGUCCCg -3'
miRNA:   3'- -CGuUUC-CCAaaCGCGCU------------AGGC-----CAGGG- -5'
3118 3' -53.3 NC_001493.1 + 43457 0.66 0.959095
Target:  5'- cCGGGGGGUcgaucUGCGCGG-CCGaUCUCg -3'
miRNA:   3'- cGUUUCCCAa----ACGCGCUaGGCcAGGG- -5'
3118 3' -53.3 NC_001493.1 + 46210 0.67 0.932615
Target:  5'- -aGAAGGGcuccGCGCGuucaaugcgCCGGUgCCCg -3'
miRNA:   3'- cgUUUCCCaaa-CGCGCua-------GGCCA-GGG- -5'
3118 3' -53.3 NC_001493.1 + 48035 0.71 0.774362
Target:  5'- uGCAcuGGGUccacGCGUGuuuUCCGGUaCCCu -3'
miRNA:   3'- -CGUuuCCCAaa--CGCGCu--AGGCCA-GGG- -5'
3118 3' -53.3 NC_001493.1 + 49622 0.66 0.962681
Target:  5'- cGgAGAGGGUcgGUGCGAgaCCGaUCCa -3'
miRNA:   3'- -CgUUUCCCAaaCGCGCUa-GGCcAGGg -5'
3118 3' -53.3 NC_001493.1 + 58866 0.67 0.942409
Target:  5'- cGUAGAGGGc---CGUGAgCCGGUCgCg -3'
miRNA:   3'- -CGUUUCCCaaacGCGCUaGGCCAGgG- -5'
3118 3' -53.3 NC_001493.1 + 69510 0.68 0.916071
Target:  5'- cCGAGGGGUaugGCGCGcgCCu-UCCCc -3'
miRNA:   3'- cGUUUCCCAaa-CGCGCuaGGccAGGG- -5'
3118 3' -53.3 NC_001493.1 + 73048 0.7 0.845426
Target:  5'- uGCAGAGGGUacacagGgGCGAgcucuccaucCCGG-CCCa -3'
miRNA:   3'- -CGUUUCCCAaa----CgCGCUa---------GGCCaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.