Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3118 | 3' | -53.3 | NC_001493.1 | + | 49622 | 0.66 | 0.962681 |
Target: 5'- cGgAGAGGGUcgGUGCGAgaCCGaUCCa -3' miRNA: 3'- -CgUUUCCCAaaCGCGCUa-GGCcAGGg -5' |
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3118 | 3' | -53.3 | NC_001493.1 | + | 7742 | 0.66 | 0.969184 |
Target: 5'- cGCAcAGGGagagccgcgGUGCGucuAUCCgagcGGUCCCg -3' miRNA: 3'- -CGUuUCCCaaa------CGCGC---UAGG----CCAGGG- -5' |
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3118 | 3' | -53.3 | NC_001493.1 | + | 10852 | 0.66 | 0.966042 |
Target: 5'- cGCGGccGGUU--CGCGAUCCGGgacUCuCCg -3' miRNA: 3'- -CGUUucCCAAacGCGCUAGGCC---AG-GG- -5' |
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3118 | 3' | -53.3 | NC_001493.1 | + | 9159 | 0.66 | 0.961629 |
Target: 5'- gGCGAGGGGggagGcCGUGAUgCGaaccaucgccacccGUCCCg -3' miRNA: 3'- -CGUUUCCCaaa-C-GCGCUAgGC--------------CAGGG- -5' |
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3118 | 3' | -53.3 | NC_001493.1 | + | 101991 | 0.66 | 0.961274 |
Target: 5'- -gGAAGaGGUUcUGCGCGugcucgagacacCCGGUCCg -3' miRNA: 3'- cgUUUC-CCAA-ACGCGCua----------GGCCAGGg -5' |
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3118 | 3' | -53.3 | NC_001493.1 | + | 87796 | 0.66 | 0.959095 |
Target: 5'- cCGGGGGGcaggucccgGgGUaGAUCCGGUCCUc -3' miRNA: 3'- cGUUUCCCaaa------CgCG-CUAGGCCAGGG- -5' |
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3118 | 3' | -53.3 | NC_001493.1 | + | 43457 | 0.66 | 0.959095 |
Target: 5'- cCGGGGGGUcgaucUGCGCGG-CCGaUCUCg -3' miRNA: 3'- cGUUUCCCAa----ACGCGCUaGGCcAGGG- -5' |
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3118 | 3' | -53.3 | NC_001493.1 | + | 93314 | 0.66 | 0.958724 |
Target: 5'- cGCGAugguucGGGUgaccGCGCGGaCCGGUgcgcucguaucgaCCCg -3' miRNA: 3'- -CGUUu-----CCCAaa--CGCGCUaGGCCA-------------GGG- -5' |
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3118 | 3' | -53.3 | NC_001493.1 | + | 124714 | 0.66 | 0.958724 |
Target: 5'- gGCGAGGGGggagGcCGUGAUgCGaaccaucgccaccGUCCCg -3' miRNA: 3'- -CGUUUCCCaaa-C-GCGCUAgGC-------------CAGGG- -5' |
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3118 | 3' | -53.3 | NC_001493.1 | + | 124890 | 0.66 | 0.955279 |
Target: 5'- cGCGGAGGacGUggaGCGCGuggaCGcGUCCCg -3' miRNA: 3'- -CGUUUCC--CAaa-CGCGCuag-GC-CAGGG- -5' |
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3118 | 3' | -53.3 | NC_001493.1 | + | 126406 | 0.66 | 0.966042 |
Target: 5'- cGCGGccGGUU--CGCGAUCCGGgacUCuCCg -3' miRNA: 3'- -CGUUucCCAAacGCGCUAGGCC---AG-GG- -5' |
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3118 | 3' | -53.3 | NC_001493.1 | + | 107603 | 0.66 | 0.972113 |
Target: 5'- cCGAAGGuug-GCgGCGuugacaCCGGUCCCg -3' miRNA: 3'- cGUUUCCcaaaCG-CGCua----GGCCAGGG- -5' |
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3118 | 3' | -53.3 | NC_001493.1 | + | 123296 | 0.66 | 0.969184 |
Target: 5'- cGCAcAGGGagagccgcgGUGCGucuAUCCgagcGGUCCCg -3' miRNA: 3'- -CGUuUCCCaaa------CGCGC---UAGG----CCAGGG- -5' |
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3118 | 3' | -53.3 | NC_001493.1 | + | 9336 | 0.66 | 0.955279 |
Target: 5'- cGCGGAGGacGUggaGCGCGuggaCGcGUCCCg -3' miRNA: 3'- -CGUUUCC--CAaa-CGCGCuag-GC-CAGGG- -5' |
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3118 | 3' | -53.3 | NC_001493.1 | + | 19753 | 0.66 | 0.955279 |
Target: 5'- cGCGGAGGGUacgcuccCGCGGcaCCGGggaUCCCc -3' miRNA: 3'- -CGUUUCCCAaac----GCGCUa-GGCC---AGGG- -5' |
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3118 | 3' | -53.3 | NC_001493.1 | + | 46210 | 0.67 | 0.932615 |
Target: 5'- -aGAAGGGcuccGCGCGuucaaugcgCCGGUgCCCg -3' miRNA: 3'- cgUUUCCCaaa-CGCGCua-------GGCCA-GGG- -5' |
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3118 | 3' | -53.3 | NC_001493.1 | + | 58866 | 0.67 | 0.942409 |
Target: 5'- cGUAGAGGGc---CGUGAgCCGGUCgCg -3' miRNA: 3'- -CGUUUCCCaaacGCGCUaGGCCAGgG- -5' |
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3118 | 3' | -53.3 | NC_001493.1 | + | 31350 | 0.67 | 0.942409 |
Target: 5'- gGCcGAGaGGUggGCGCGGgcgguugcagcgUCCGuucgaGUCCCg -3' miRNA: 3'- -CGuUUC-CCAaaCGCGCU------------AGGC-----CAGGG- -5' |
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3118 | 3' | -53.3 | NC_001493.1 | + | 19986 | 0.67 | 0.945606 |
Target: 5'- -gAGAGuGG-UUGCGCaccauGAacaacccgcucuggUCCGGUCCCg -3' miRNA: 3'- cgUUUC-CCaAACGCG-----CU--------------AGGCCAGGG- -5' |
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3118 | 3' | -53.3 | NC_001493.1 | + | 126365 | 0.67 | 0.951228 |
Target: 5'- ---cGGGGagcucGCGCGAUCgGGcgcgUCCCg -3' miRNA: 3'- cguuUCCCaaa--CGCGCUAGgCC----AGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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