Results 1 - 20 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31185 | 3' | -58 | NC_006560.1 | + | 51170 | 0.66 | 0.83461 |
Target: 5'- -cGCCUuucuggggcGCGUcCUCGAcGUCCUgGCGg -3' miRNA: 3'- uuCGGGu--------CGCA-GAGCUaCAGGAgCGC- -5' |
|||||||
31185 | 3' | -58 | NC_006560.1 | + | 27425 | 0.66 | 0.8178 |
Target: 5'- cGGGCCUccGGCGUUUCGcguccgcGUCCUccCGCGg -3' miRNA: 3'- -UUCGGG--UCGCAGAGCua-----CAGGA--GCGC- -5' |
|||||||
31185 | 3' | -58 | NC_006560.1 | + | 20636 | 0.66 | 0.8178 |
Target: 5'- gGGGCUCcGCuuGUCUCGuuccguacGUGUCCUgCGCGg -3' miRNA: 3'- -UUCGGGuCG--CAGAGC--------UACAGGA-GCGC- -5' |
|||||||
31185 | 3' | -58 | NC_006560.1 | + | 135274 | 0.66 | 0.809141 |
Target: 5'- uAGCCCAGC-UCgccggaGAgggCCUCGCGg -3' miRNA: 3'- uUCGGGUCGcAGag----CUacaGGAGCGC- -5' |
|||||||
31185 | 3' | -58 | NC_006560.1 | + | 22325 | 0.66 | 0.809141 |
Target: 5'- gGAGCUC-GCGgagCUCGcgGagCUCGCGg -3' miRNA: 3'- -UUCGGGuCGCa--GAGCuaCagGAGCGC- -5' |
|||||||
31185 | 3' | -58 | NC_006560.1 | + | 36022 | 0.66 | 0.800324 |
Target: 5'- gGGGCCCGGgGUguaUUUGGcuUGUCCgCGCGg -3' miRNA: 3'- -UUCGGGUCgCA---GAGCU--ACAGGaGCGC- -5' |
|||||||
31185 | 3' | -58 | NC_006560.1 | + | 1140 | 0.66 | 0.791356 |
Target: 5'- cGGCCCGGCcUC-CGggGuUCCUgGCGg -3' miRNA: 3'- uUCGGGUCGcAGaGCuaC-AGGAgCGC- -5' |
|||||||
31185 | 3' | -58 | NC_006560.1 | + | 124809 | 0.66 | 0.790451 |
Target: 5'- cGAGCCCGGCGacgcgcccgucgCgggcgugcacgcgugCGggGUCCUCGUGg -3' miRNA: 3'- -UUCGGGUCGCa-----------Ga--------------GCuaCAGGAGCGC- -5' |
|||||||
31185 | 3' | -58 | NC_006560.1 | + | 130512 | 0.67 | 0.773004 |
Target: 5'- -cGCCCGGCGgccggC-CGGUGgcgCCgCGCGg -3' miRNA: 3'- uuCGGGUCGCa----GaGCUACa--GGaGCGC- -5' |
|||||||
31185 | 3' | -58 | NC_006560.1 | + | 55391 | 0.67 | 0.763637 |
Target: 5'- cGAGCCggcaGGUGUaCUCGcUGUgCUCGCGc -3' miRNA: 3'- -UUCGGg---UCGCA-GAGCuACAgGAGCGC- -5' |
|||||||
31185 | 3' | -58 | NC_006560.1 | + | 100238 | 0.67 | 0.734881 |
Target: 5'- cGAGCUCGGC--CUCGgcGgCCUCGCGg -3' miRNA: 3'- -UUCGGGUCGcaGAGCuaCaGGAGCGC- -5' |
|||||||
31185 | 3' | -58 | NC_006560.1 | + | 26093 | 0.68 | 0.725108 |
Target: 5'- cGGCCCGGCG-CggCGggGgCUUCGCGg -3' miRNA: 3'- uUCGGGUCGCaGa-GCuaCaGGAGCGC- -5' |
|||||||
31185 | 3' | -58 | NC_006560.1 | + | 78080 | 0.68 | 0.725108 |
Target: 5'- cGGCCgCGGCG-CUCGggGgCCUCGaCGg -3' miRNA: 3'- uUCGG-GUCGCaGAGCuaCaGGAGC-GC- -5' |
|||||||
31185 | 3' | -58 | NC_006560.1 | + | 127555 | 0.68 | 0.705332 |
Target: 5'- -cGCCCGguacGCGUCgagCG-UGUCgCUCGCGc -3' miRNA: 3'- uuCGGGU----CGCAGa--GCuACAG-GAGCGC- -5' |
|||||||
31185 | 3' | -58 | NC_006560.1 | + | 64789 | 0.69 | 0.665118 |
Target: 5'- cGGCCCGGCGcuccgCUCccccgCCUCGCGg -3' miRNA: 3'- uUCGGGUCGCa----GAGcuacaGGAGCGC- -5' |
|||||||
31185 | 3' | -58 | NC_006560.1 | + | 18919 | 0.69 | 0.654978 |
Target: 5'- cGGCCCGGCGUCcgugcgCGgcGUgCCgCGCGg -3' miRNA: 3'- uUCGGGUCGCAGa-----GCuaCA-GGaGCGC- -5' |
|||||||
31185 | 3' | -58 | NC_006560.1 | + | 130288 | 0.7 | 0.614315 |
Target: 5'- cGGGCCCGGCGagaUCUCGGccgCCggCGCGg -3' miRNA: 3'- -UUCGGGUCGC---AGAGCUacaGGa-GCGC- -5' |
|||||||
31185 | 3' | -58 | NC_006560.1 | + | 41662 | 0.7 | 0.604164 |
Target: 5'- -cGCCC-GCGUC-CGGUGcCgUCGCGg -3' miRNA: 3'- uuCGGGuCGCAGaGCUACaGgAGCGC- -5' |
|||||||
31185 | 3' | -58 | NC_006560.1 | + | 105070 | 0.7 | 0.583929 |
Target: 5'- -uGCuCCucgcGgGUCUCGccGUCCUCGCGg -3' miRNA: 3'- uuCG-GGu---CgCAGAGCuaCAGGAGCGC- -5' |
|||||||
31185 | 3' | -58 | NC_006560.1 | + | 62390 | 0.7 | 0.57386 |
Target: 5'- cGGCuCCGGUG-CUCGAgggggUGUCCaUCGCGa -3' miRNA: 3'- uUCG-GGUCGCaGAGCU-----ACAGG-AGCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home