Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31185 | 5' | -60.3 | NC_006560.1 | + | 3444 | 0.68 | 0.539797 |
Target: 5'- -cCGCGGGG-GCgaGGagcucUUGCGCuUGCGGg -3' miRNA: 3'- aaGCGCCCCuCGa-CC-----AACGCG-ACGUC- -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 8934 | 0.72 | 0.329855 |
Target: 5'- -gCGCGGGGGGCUuuuaUGCGCcGCGGg -3' miRNA: 3'- aaGCGCCCCUCGAcca-ACGCGaCGUC- -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 16373 | 0.67 | 0.620066 |
Target: 5'- -gCGagGGGGGGCaUGGcgGCGCggGCGGg -3' miRNA: 3'- aaGCg-CCCCUCG-ACCaaCGCGa-CGUC- -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 20553 | 0.7 | 0.418522 |
Target: 5'- --gGCGGGGGGCUGGgguuCGCcgagGCGGa -3' miRNA: 3'- aagCGCCCCUCGACCaac-GCGa---CGUC- -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 25980 | 0.69 | 0.480073 |
Target: 5'- -cCGCGGGGGGCgagggccgcgggGGgagggGCGCcgUGCGGg -3' miRNA: 3'- aaGCGCCCCUCGa-----------CCaa---CGCG--ACGUC- -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 26123 | 0.74 | 0.24923 |
Target: 5'- cUUCGCGGGGGccccgccggggcuGCgUGGggGCGCgGCAGg -3' miRNA: 3'- -AAGCGCCCCU-------------CG-ACCaaCGCGaCGUC- -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 26495 | 0.71 | 0.392931 |
Target: 5'- --gGCGGGGGGC-GGgcGCGCgaggggGCGGg -3' miRNA: 3'- aagCGCCCCUCGaCCaaCGCGa-----CGUC- -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 26622 | 0.66 | 0.650505 |
Target: 5'- -cCGCGGGGGGggGGgacgGgGCcGCGGg -3' miRNA: 3'- aaGCGCCCCUCgaCCaa--CgCGaCGUC- -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 27388 | 0.68 | 0.540783 |
Target: 5'- -gCGCGGGGGGCcGGgcccucccgcggcgGCGCgcgcGCGGg -3' miRNA: 3'- aaGCGCCCCUCGaCCaa------------CGCGa---CGUC- -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 33396 | 0.71 | 0.392931 |
Target: 5'- --gGCGGGGAGagGGggGCGCggGCGGg -3' miRNA: 3'- aagCGCCCCUCgaCCaaCGCGa-CGUC- -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 33637 | 0.69 | 0.510533 |
Target: 5'- --gGCGGGGGGCgccGGggGCgGCcGCGGg -3' miRNA: 3'- aagCGCCCCUCGa--CCaaCG-CGaCGUC- -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 34394 | 0.66 | 0.650505 |
Target: 5'- -cCGCGGGGGGggGGgugGgGCgGCGGc -3' miRNA: 3'- aaGCGCCCCUCgaCCaa-CgCGaCGUC- -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 34462 | 0.7 | 0.427274 |
Target: 5'- gUCGCGGGGGGCguucgcGGgcGUG-UGCGGg -3' miRNA: 3'- aAGCGCCCCUCGa-----CCaaCGCgACGUC- -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 37504 | 0.66 | 0.680813 |
Target: 5'- gUUGCGGGGuGggGGUUuggcGCGCcGCGGc -3' miRNA: 3'- aAGCGCCCCuCgaCCAA----CGCGaCGUC- -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 45236 | 0.68 | 0.559619 |
Target: 5'- -aCGCGGGaGGGCcggGGggGCGuCUGUGGc -3' miRNA: 3'- aaGCGCCC-CUCGa--CCaaCGC-GACGUC- -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 69452 | 0.68 | 0.559619 |
Target: 5'- -cCGCGGGGcuGGCgGGggGCGUccugagGCAGa -3' miRNA: 3'- aaGCGCCCC--UCGaCCaaCGCGa-----CGUC- -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 71335 | 0.67 | 0.620066 |
Target: 5'- cUCGCGGGG-GCgGGggaggGgGCgGCGGg -3' miRNA: 3'- aAGCGCCCCuCGaCCaa---CgCGaCGUC- -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 72370 | 0.68 | 0.54968 |
Target: 5'- cUCGCGGGGGcgccGCUG---GCGCUGCc- -3' miRNA: 3'- aAGCGCCCCU----CGACcaaCGCGACGuc -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 77659 | 0.66 | 0.690849 |
Target: 5'- -cCGCuGGGacGAGCUGGgguggGCGC-GCGGa -3' miRNA: 3'- aaGCG-CCC--CUCGACCaa---CGCGaCGUC- -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 79808 | 0.67 | 0.599805 |
Target: 5'- cUCGaUGGGGGGCgcGGUgGCGCcggGCGGc -3' miRNA: 3'- aAGC-GCCCCUCGa-CCAaCGCGa--CGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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