miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31185 5' -60.3 NC_006560.1 + 104192 0.66 0.690849
Target:  5'- cUCGUGGGGAGCc---UGuCGCUGCc- -3'
miRNA:   3'- aAGCGCCCCUCGaccaAC-GCGACGuc -5'
31185 5' -60.3 NC_006560.1 + 147291 0.69 0.481951
Target:  5'- --gGCGGGGGGCucUGGcggGCGCcggGCGGa -3'
miRNA:   3'- aagCGCCCCUCG--ACCaa-CGCGa--CGUC- -5'
31185 5' -60.3 NC_006560.1 + 33637 0.69 0.510533
Target:  5'- --gGCGGGGGGCgccGGggGCgGCcGCGGg -3'
miRNA:   3'- aagCGCCCCUCGa--CCaaCG-CGaCGUC- -5'
31185 5' -60.3 NC_006560.1 + 99300 0.69 0.510533
Target:  5'- gUCG-GGGGAGgUGGUgggGCGCggggGCGu -3'
miRNA:   3'- aAGCgCCCCUCgACCAa--CGCGa---CGUc -5'
31185 5' -60.3 NC_006560.1 + 3444 0.68 0.539797
Target:  5'- -cCGCGGGG-GCgaGGagcucUUGCGCuUGCGGg -3'
miRNA:   3'- aaGCGCCCCuCGa-CC-----AACGCG-ACGUC- -5'
31185 5' -60.3 NC_006560.1 + 27388 0.68 0.540783
Target:  5'- -gCGCGGGGGGCcGGgcccucccgcggcgGCGCgcgcGCGGg -3'
miRNA:   3'- aaGCGCCCCUCGaCCaa------------CGCGa---CGUC- -5'
31185 5' -60.3 NC_006560.1 + 114341 0.68 0.54968
Target:  5'- -cCGCGGGGgcgcgcGGCcGGggGCGCguacGCGGg -3'
miRNA:   3'- aaGCGCCCC------UCGaCCaaCGCGa---CGUC- -5'
31185 5' -60.3 NC_006560.1 + 72370 0.68 0.54968
Target:  5'- cUCGCGGGGGcgccGCUG---GCGCUGCc- -3'
miRNA:   3'- aAGCGCCCCU----CGACcaaCGCGACGuc -5'
31185 5' -60.3 NC_006560.1 + 114838 0.68 0.54968
Target:  5'- -cUGCGGGG-GCUG---GCGCUGUAGc -3'
miRNA:   3'- aaGCGCCCCuCGACcaaCGCGACGUC- -5'
31185 5' -60.3 NC_006560.1 + 25980 0.69 0.480073
Target:  5'- -cCGCGGGGGGCgagggccgcgggGGgagggGCGCcgUGCGGg -3'
miRNA:   3'- aaGCGCCCCUCGa-----------CCaa---CGCG--ACGUC- -5'
31185 5' -60.3 NC_006560.1 + 147385 0.69 0.463334
Target:  5'- -gCGgGGGGGGCggagGGgaGCGCgggcgGCAGc -3'
miRNA:   3'- aaGCgCCCCUCGa---CCaaCGCGa----CGUC- -5'
31185 5' -60.3 NC_006560.1 + 146463 0.7 0.436134
Target:  5'- --gGCGGaGGAGCgGGggGCGgaGCGGc -3'
miRNA:   3'- aagCGCC-CCUCGaCCaaCGCgaCGUC- -5'
31185 5' -60.3 NC_006560.1 + 8934 0.72 0.329855
Target:  5'- -gCGCGGGGGGCUuuuaUGCGCcGCGGg -3'
miRNA:   3'- aaGCGCCCCUCGAcca-ACGCGaCGUC- -5'
31185 5' -60.3 NC_006560.1 + 147100 0.72 0.3449
Target:  5'- gUCgGCGGGGGGC-GGgcGCGCgacGCGGg -3'
miRNA:   3'- aAG-CGCCCCUCGaCCaaCGCGa--CGUC- -5'
31185 5' -60.3 NC_006560.1 + 133541 0.72 0.352605
Target:  5'- --gGCGGGGAGCcGGcgGCGC-GCGGc -3'
miRNA:   3'- aagCGCCCCUCGaCCaaCGCGaCGUC- -5'
31185 5' -60.3 NC_006560.1 + 26495 0.71 0.392931
Target:  5'- --gGCGGGGGGC-GGgcGCGCgaggggGCGGg -3'
miRNA:   3'- aagCGCCCCUCGaCCaaCGCGa-----CGUC- -5'
31185 5' -60.3 NC_006560.1 + 131377 0.71 0.392931
Target:  5'- -gCGCGGGGGGCgcGGUgcuggcggGCGCUggccGCGGa -3'
miRNA:   3'- aaGCGCCCCUCGa-CCAa-------CGCGA----CGUC- -5'
31185 5' -60.3 NC_006560.1 + 33396 0.71 0.392931
Target:  5'- --gGCGGGGAGagGGggGCGCggGCGGg -3'
miRNA:   3'- aagCGCCCCUCgaCCaaCGCGa-CGUC- -5'
31185 5' -60.3 NC_006560.1 + 20553 0.7 0.418522
Target:  5'- --gGCGGGGGGCUGGgguuCGCcgagGCGGa -3'
miRNA:   3'- aagCGCCCCUCGACCaac-GCGa---CGUC- -5'
31185 5' -60.3 NC_006560.1 + 34462 0.7 0.427274
Target:  5'- gUCGCGGGGGGCguucgcGGgcGUG-UGCGGg -3'
miRNA:   3'- aAGCGCCCCUCGa-----CCaaCGCgACGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.