miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31186 5' -60.7 NC_006560.1 + 12346 0.7 0.420008
Target:  5'- cUCggGGCUGGCGGgGCGGGCGucucGAc -3'
miRNA:   3'- uAGaaCCGGUCGUCgCGCCCGCu---CUu -5'
31186 5' -60.7 NC_006560.1 + 12706 0.66 0.623154
Target:  5'- ---gUGGUCGGCgggGGUGgGGGCGGGGc -3'
miRNA:   3'- uagaACCGGUCG---UCGCgCCCGCUCUu -5'
31186 5' -60.7 NC_006560.1 + 16381 0.71 0.338123
Target:  5'- ----gGGCaUGGCGGCGCGGGCGGGc- -3'
miRNA:   3'- uagaaCCG-GUCGUCGCGCCCGCUCuu -5'
31186 5' -60.7 NC_006560.1 + 17066 0.66 0.633367
Target:  5'- ---aUGGCgcuCAGCAGCugGCGGGCGAc-- -3'
miRNA:   3'- uagaACCG---GUCGUCG--CGCCCGCUcuu -5'
31186 5' -60.7 NC_006560.1 + 20599 0.66 0.64358
Target:  5'- ----cGGUCGGCauGGCGCGGGUGGuGGGg -3'
miRNA:   3'- uagaaCCGGUCG--UCGCGCCCGCU-CUU- -5'
31186 5' -60.7 NC_006560.1 + 20895 0.66 0.640517
Target:  5'- ----cGGCgCGGCguucccgggcggugGGCGCGGaGCGAGGAg -3'
miRNA:   3'- uagaaCCG-GUCG--------------UCGCGCC-CGCUCUU- -5'
31186 5' -60.7 NC_006560.1 + 26481 0.66 0.612948
Target:  5'- ----cGGCCGGCGGCcccggcgggggGCGGGCGcgcGAGg -3'
miRNA:   3'- uagaaCCGGUCGUCG-----------CGCCCGCu--CUU- -5'
31186 5' -60.7 NC_006560.1 + 27271 0.66 0.633367
Target:  5'- ----cGGCCgcGGCcGCGgGGGCGGGGc -3'
miRNA:   3'- uagaaCCGG--UCGuCGCgCCCGCUCUu -5'
31186 5' -60.7 NC_006560.1 + 28192 0.8 0.095295
Target:  5'- gGUCccgGGCCGGCGGCcCGGGCGGGGAg -3'
miRNA:   3'- -UAGaa-CCGGUCGUCGcGCCCGCUCUU- -5'
31186 5' -60.7 NC_006560.1 + 32065 0.73 0.274887
Target:  5'- cUCUgggggcaggGGCC-GCAGgGCGGGCGGGGg -3'
miRNA:   3'- uAGAa--------CCGGuCGUCgCGCCCGCUCUu -5'
31186 5' -60.7 NC_006560.1 + 32135 0.66 0.633367
Target:  5'- -cCggGGCCGGUcacGGC-CGGGCGGGGc -3'
miRNA:   3'- uaGaaCCGGUCG---UCGcGCCCGCUCUu -5'
31186 5' -60.7 NC_006560.1 + 32801 0.69 0.437771
Target:  5'- ----gGGCCGGgGGCGCGGcCGGGGAg -3'
miRNA:   3'- uagaaCCGGUCgUCGCGCCcGCUCUU- -5'
31186 5' -60.7 NC_006560.1 + 32968 0.69 0.446813
Target:  5'- ----aGGCCGGCgagggcaggGGgGUGGGCGGGAAg -3'
miRNA:   3'- uagaaCCGGUCG---------UCgCGCCCGCUCUU- -5'
31186 5' -60.7 NC_006560.1 + 32998 0.69 0.446813
Target:  5'- ----aGGCCGGCgagggcaggGGgGUGGGCGGGAAg -3'
miRNA:   3'- uagaaCCGGUCG---------UCgCGCCCGCUCUU- -5'
31186 5' -60.7 NC_006560.1 + 33272 0.66 0.64358
Target:  5'- gGUCgggGGCCugGGCGGCGgGGGUuGGGu -3'
miRNA:   3'- -UAGaa-CCGG--UCGUCGCgCCCGcUCUu -5'
31186 5' -60.7 NC_006560.1 + 33379 0.67 0.582443
Target:  5'- -gCggGGCCgcggagaggGGCggggagaggggGGCGCGGGCGGGGAg -3'
miRNA:   3'- uaGaaCCGG---------UCG-----------UCGCGCCCGCUCUU- -5'
31186 5' -60.7 NC_006560.1 + 34515 0.68 0.532396
Target:  5'- ----aGGCCGGCAcggggcGCGCGGGgGcAGAGg -3'
miRNA:   3'- uagaaCCGGUCGU------CGCGCCCgC-UCUU- -5'
31186 5' -60.7 NC_006560.1 + 37531 0.67 0.592585
Target:  5'- ----cGGCuCGGCcGCGCGGGCGGc-- -3'
miRNA:   3'- uagaaCCG-GUCGuCGCGCCCGCUcuu -5'
31186 5' -60.7 NC_006560.1 + 39949 0.71 0.338123
Target:  5'- cGUCgguaggcgGGgCGGCGGCGCGGGCGGc-- -3'
miRNA:   3'- -UAGaa------CCgGUCGUCGCGCCCGCUcuu -5'
31186 5' -60.7 NC_006560.1 + 40080 0.71 0.345768
Target:  5'- ---aUGGCguGCGGUGgGGGCGGGGc -3'
miRNA:   3'- uagaACCGguCGUCGCgCCCGCUCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.