miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31186 5' -60.7 NC_006560.1 + 1863 0.68 0.512796
Target:  5'- gGUCgcGGgCGGgGGuCGCGGGCGGGGGu -3'
miRNA:   3'- -UAGaaCCgGUCgUC-GCGCCCGCUCUU- -5'
31186 5' -60.7 NC_006560.1 + 2301 0.67 0.551259
Target:  5'- aGUCgggcGcGCCGGCGgcggccgccucgcGCGCGGGCGAGu- -3'
miRNA:   3'- -UAGaa--C-CGGUCGU-------------CGCGCCCGCUCuu -5'
31186 5' -60.7 NC_006560.1 + 2917 0.72 0.315929
Target:  5'- gGUCcaGGCgGGCGGgGCGGGgGAGAc -3'
miRNA:   3'- -UAGaaCCGgUCGUCgCGCCCgCUCUu -5'
31186 5' -60.7 NC_006560.1 + 3116 0.7 0.402688
Target:  5'- ----aGGCCAGCGcGCGCGGGuCGAa-- -3'
miRNA:   3'- uagaaCCGGUCGU-CGCGCCC-GCUcuu -5'
31186 5' -60.7 NC_006560.1 + 3216 0.67 0.562273
Target:  5'- cUCgaGGgCGGCGGCgGCGGGCGGc-- -3'
miRNA:   3'- uAGaaCCgGUCGUCG-CGCCCGCUcuu -5'
31186 5' -60.7 NC_006560.1 + 3324 0.76 0.168452
Target:  5'- ----gGGCCGGgGGCGCGGGCGGGc- -3'
miRNA:   3'- uagaaCCGGUCgUCGCGCCCGCUCuu -5'
31186 5' -60.7 NC_006560.1 + 3374 0.66 0.612948
Target:  5'- ----cGGCgGGCGG-GCGGGCGGGc- -3'
miRNA:   3'- uagaaCCGgUCGUCgCGCCCGCUCuu -5'
31186 5' -60.7 NC_006560.1 + 3406 0.69 0.446813
Target:  5'- uUCUUGcgcGCCGGCGG-GCGGGCGGcGGg -3'
miRNA:   3'- uAGAAC---CGGUCGUCgCGCCCGCU-CUu -5'
31186 5' -60.7 NC_006560.1 + 3460 0.67 0.592585
Target:  5'- cUCUUGcGCUugcgGGCcGCGCGGGCGGc-- -3'
miRNA:   3'- uAGAAC-CGG----UCGuCGCGCCCGCUcuu -5'
31186 5' -60.7 NC_006560.1 + 3588 0.7 0.385828
Target:  5'- -gCUgcgGGCCAGCAGCGgCGcGGCGGc-- -3'
miRNA:   3'- uaGAa--CCGGUCGUCGC-GC-CCGCUcuu -5'
31186 5' -60.7 NC_006560.1 + 3759 0.66 0.653783
Target:  5'- ----gGGCgCGGCGGCGCcgcgcGGCGGGAc -3'
miRNA:   3'- uagaaCCG-GUCGUCGCGc----CCGCUCUu -5'
31186 5' -60.7 NC_006560.1 + 4155 0.68 0.532396
Target:  5'- cUCaUGGCCacggcggcGGCGGCGUGGGCcAGGc -3'
miRNA:   3'- uAGaACCGG--------UCGUCGCGCCCGcUCUu -5'
31186 5' -60.7 NC_006560.1 + 4756 0.66 0.653783
Target:  5'- ----cGGCCcgcGGCGGCgGCGGcGCGGGGu -3'
miRNA:   3'- uagaaCCGG---UCGUCG-CGCC-CGCUCUu -5'
31186 5' -60.7 NC_006560.1 + 4873 0.68 0.532396
Target:  5'- cGUCgacGGCggCGGCGGCGCcGGCGGGGg -3'
miRNA:   3'- -UAGaa-CCG--GUCGUCGCGcCCGCUCUu -5'
31186 5' -60.7 NC_006560.1 + 5079 0.67 0.582443
Target:  5'- cGUCgccGGCguGCGGCGCGccgcccggggucGGCGGGGg -3'
miRNA:   3'- -UAGaa-CCGguCGUCGCGC------------CCGCUCUu -5'
31186 5' -60.7 NC_006560.1 + 5488 0.67 0.572337
Target:  5'- gGUCgcggcgagGGUCGGCGGCGguCGcGGCGAGGGu -3'
miRNA:   3'- -UAGaa------CCGGUCGUCGC--GC-CCGCUCUU- -5'
31186 5' -60.7 NC_006560.1 + 5763 0.66 0.653783
Target:  5'- ----cGGCCGGCGGCGCcgcgcgcaGGCGcGGAAg -3'
miRNA:   3'- uagaaCCGGUCGUCGCGc-------CCGC-UCUU- -5'
31186 5' -60.7 NC_006560.1 + 11139 0.73 0.274887
Target:  5'- cGUCgagGGCCccggGGCGGCGCGGcgagcGCGAGAGu -3'
miRNA:   3'- -UAGaa-CCGG----UCGUCGCGCC-----CGCUCUU- -5'
31186 5' -60.7 NC_006560.1 + 11632 0.68 0.483977
Target:  5'- uUCcgggGGCuCGGCGGUccggGCGGGCGGGGGa -3'
miRNA:   3'- uAGaa--CCG-GUCGUCG----CGCCCGCUCUU- -5'
31186 5' -60.7 NC_006560.1 + 11671 0.69 0.446813
Target:  5'- uUCcgggGGCuCGGCGGUccggGCGGGCGGGAu -3'
miRNA:   3'- uAGaa--CCG-GUCGUCG----CGCCCGCUCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.