miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31186 5' -60.7 NC_006560.1 + 28192 0.8 0.095295
Target:  5'- gGUCccgGGCCGGCGGCcCGGGCGGGGAg -3'
miRNA:   3'- -UAGaa-CCGGUCGUCGcGCCCGCUCUU- -5'
31186 5' -60.7 NC_006560.1 + 3324 0.76 0.168452
Target:  5'- ----gGGCCGGgGGCGCGGGCGGGc- -3'
miRNA:   3'- uagaaCCGGUCgUCGCGCCCGCUCuu -5'
31186 5' -60.7 NC_006560.1 + 81364 0.75 0.195798
Target:  5'- ----cGGCCaccAGCAGCGCGGGCG-GAAc -3'
miRNA:   3'- uagaaCCGG---UCGUCGCGCCCGCuCUU- -5'
31186 5' -60.7 NC_006560.1 + 32065 0.73 0.274887
Target:  5'- cUCUgggggcaggGGCC-GCAGgGCGGGCGGGGg -3'
miRNA:   3'- uAGAa--------CCGGuCGUCgCGCCCGCUCUu -5'
31186 5' -60.7 NC_006560.1 + 11139 0.73 0.274887
Target:  5'- cGUCgagGGCCccggGGCGGCGCGGcgagcGCGAGAGu -3'
miRNA:   3'- -UAGaa-CCGG----UCGUCGCGCC-----CGCUCUU- -5'
31186 5' -60.7 NC_006560.1 + 59467 0.72 0.281419
Target:  5'- ----cGGCCGGCcgaaCGCGGGCGGGAGg -3'
miRNA:   3'- uagaaCCGGUCGuc--GCGCCCGCUCUU- -5'
31186 5' -60.7 NC_006560.1 + 2917 0.72 0.315929
Target:  5'- gGUCcaGGCgGGCGGgGCGGGgGAGAc -3'
miRNA:   3'- -UAGaaCCGgUCGUCgCGCCCgCUCUu -5'
31186 5' -60.7 NC_006560.1 + 94979 0.71 0.323203
Target:  5'- cAUCgggggcgGGCgCGGCGaCGCGGGCGAGAc -3'
miRNA:   3'- -UAGaa-----CCG-GUCGUcGCGCCCGCUCUu -5'
31186 5' -60.7 NC_006560.1 + 16381 0.71 0.338123
Target:  5'- ----gGGCaUGGCGGCGCGGGCGGGc- -3'
miRNA:   3'- uagaaCCG-GUCGUCGCGCCCGCUCuu -5'
31186 5' -60.7 NC_006560.1 + 39949 0.71 0.338123
Target:  5'- cGUCgguaggcgGGgCGGCGGCGCGGGCGGc-- -3'
miRNA:   3'- -UAGaa------CCgGUCGUCGCGCCCGCUcuu -5'
31186 5' -60.7 NC_006560.1 + 40080 0.71 0.345768
Target:  5'- ---aUGGCguGCGGUGgGGGCGGGGc -3'
miRNA:   3'- uagaACCGguCGUCGCgCCCGCUCUu -5'
31186 5' -60.7 NC_006560.1 + 56364 0.71 0.353537
Target:  5'- cUCUUGGUCGGCcucucgcGCGCGGGgcCGGGGAg -3'
miRNA:   3'- uAGAACCGGUCGu------CGCGCCC--GCUCUU- -5'
31186 5' -60.7 NC_006560.1 + 133521 0.71 0.353537
Target:  5'- -cCggGGUCGGCGGCuucGUGGGCGGGGAg -3'
miRNA:   3'- uaGaaCCGGUCGUCG---CGCCCGCUCUU- -5'
31186 5' -60.7 NC_006560.1 + 147552 0.71 0.361428
Target:  5'- ---cUGGCCcauGCGG-GCGGGCGGGGAg -3'
miRNA:   3'- uagaACCGGu--CGUCgCGCCCGCUCUU- -5'
31186 5' -60.7 NC_006560.1 + 3588 0.7 0.385828
Target:  5'- -gCUgcgGGCCAGCAGCGgCGcGGCGGc-- -3'
miRNA:   3'- uaGAa--CCGGUCGUCGC-GC-CCGCUcuu -5'
31186 5' -60.7 NC_006560.1 + 109166 0.7 0.3942
Target:  5'- gAUCUcgccgGGCCGGCGgucGCGUGGGCGgcAGAc -3'
miRNA:   3'- -UAGAa----CCGGUCGU---CGCGCCCGC--UCUu -5'
31186 5' -60.7 NC_006560.1 + 96229 0.7 0.402688
Target:  5'- gGUCgaGGCCGGCcGCGCGacgcuGCGGGAAg -3'
miRNA:   3'- -UAGaaCCGGUCGuCGCGCc----CGCUCUU- -5'
31186 5' -60.7 NC_006560.1 + 62454 0.7 0.402688
Target:  5'- -gCggGGCC-GCGGCGCGGGCGcucacAGGAc -3'
miRNA:   3'- uaGaaCCGGuCGUCGCGCCCGC-----UCUU- -5'
31186 5' -60.7 NC_006560.1 + 3116 0.7 0.402688
Target:  5'- ----aGGCCAGCGcGCGCGGGuCGAa-- -3'
miRNA:   3'- uagaaCCGGUCGU-CGCGCCC-GCUcuu -5'
31186 5' -60.7 NC_006560.1 + 12346 0.7 0.420008
Target:  5'- cUCggGGCUGGCGGgGCGGGCGucucGAc -3'
miRNA:   3'- uAGaaCCGGUCGUCgCGCCCGCu---CUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.