miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3119 5' -62.7 NC_001493.1 + 111846 1.1 0.00058
Target:  5'- cUGCGACCCAGCUCGCCCACGGCCUGGa -3'
miRNA:   3'- -ACGCUGGGUCGAGCGGGUGCCGGACC- -5'
3119 5' -62.7 NC_001493.1 + 106503 0.73 0.24033
Target:  5'- gGUGGCCCGGCaCGCCaugGCGGCCg-- -3'
miRNA:   3'- aCGCUGGGUCGaGCGGg--UGCCGGacc -5'
3119 5' -62.7 NC_001493.1 + 61357 0.71 0.322511
Target:  5'- cGCGACCCAGUccaUCcCCCGCuuGGCC-GGu -3'
miRNA:   3'- aCGCUGGGUCG---AGcGGGUG--CCGGaCC- -5'
3119 5' -62.7 NC_001493.1 + 11028 0.7 0.344227
Target:  5'- gUGCGACaaacucggCGGCUCGCUCuaauaugacgGCGGCCaUGGu -3'
miRNA:   3'- -ACGCUGg-------GUCGAGCGGG----------UGCCGG-ACC- -5'
3119 5' -62.7 NC_001493.1 + 126582 0.7 0.344227
Target:  5'- gUGCGACaaacucggCGGCUCGCUCuaauaugacgGCGGCCaUGGu -3'
miRNA:   3'- -ACGCUGg-------GUCGAGCGGG----------UGCCGG-ACC- -5'
3119 5' -62.7 NC_001493.1 + 69592 0.7 0.351696
Target:  5'- cGCGGCCuCGGCUCGUUCGCGaUCgGGg -3'
miRNA:   3'- aCGCUGG-GUCGAGCGGGUGCcGGaCC- -5'
3119 5' -62.7 NC_001493.1 + 99500 0.7 0.359279
Target:  5'- aUGUaGCCUgGGCUCGCUCGCGGUCaGGg -3'
miRNA:   3'- -ACGcUGGG-UCGAGCGGGUGCCGGaCC- -5'
3119 5' -62.7 NC_001493.1 + 44523 0.7 0.374785
Target:  5'- gUGCGACCCAGCgacuuacucaUCGCaC-CGGCgaGGu -3'
miRNA:   3'- -ACGCUGGGUCG----------AGCGgGuGCCGgaCC- -5'
3119 5' -62.7 NC_001493.1 + 28748 0.69 0.407126
Target:  5'- cGCGACCgAGa-UGCgCACGGCCgcUGGa -3'
miRNA:   3'- aCGCUGGgUCgaGCGgGUGCCGG--ACC- -5'
3119 5' -62.7 NC_001493.1 + 8122 0.69 0.41548
Target:  5'- --gGACCCggagAGCcCGaCCCGCGGCgUGGa -3'
miRNA:   3'- acgCUGGG----UCGaGC-GGGUGCCGgACC- -5'
3119 5' -62.7 NC_001493.1 + 123677 0.69 0.41548
Target:  5'- --gGACCCggagAGCcCGaCCCGCGGCgUGGa -3'
miRNA:   3'- acgCUGGG----UCGaGC-GGGUGCCGgACC- -5'
3119 5' -62.7 NC_001493.1 + 103274 0.69 0.41548
Target:  5'- aGgGACCCAGguagagguuacaCUgGUgUGCGGCCUGGa -3'
miRNA:   3'- aCgCUGGGUC------------GAgCGgGUGCCGGACC- -5'
3119 5' -62.7 NC_001493.1 + 102918 0.68 0.441161
Target:  5'- aUGaGACCCAGCUCaucaCCGCGGaugagggaCUGGg -3'
miRNA:   3'- -ACgCUGGGUCGAGcg--GGUGCCg-------GACC- -5'
3119 5' -62.7 NC_001493.1 + 20935 0.68 0.44992
Target:  5'- cGCGACU---CUCGCCgagaGCGGCCUGa -3'
miRNA:   3'- aCGCUGGgucGAGCGGg---UGCCGGACc -5'
3119 5' -62.7 NC_001493.1 + 42101 0.68 0.46682
Target:  5'- gUGCGgcgccguggacucGCCCGGCUCGgucgugaCCAUGGCCa-- -3'
miRNA:   3'- -ACGC-------------UGGGUCGAGCg------GGUGCCGGacc -5'
3119 5' -62.7 NC_001493.1 + 119750 0.68 0.476753
Target:  5'- aUGCGAUCCAGCgagUuUCgAUGGCCUGa -3'
miRNA:   3'- -ACGCUGGGUCGa--GcGGgUGCCGGACc -5'
3119 5' -62.7 NC_001493.1 + 47361 0.68 0.476753
Target:  5'- cGUGACCCAGg-CGUUgACGGCCa-- -3'
miRNA:   3'- aCGCUGGGUCgaGCGGgUGCCGGacc -5'
3119 5' -62.7 NC_001493.1 + 44019 0.68 0.485873
Target:  5'- cUGCGGCUgauCGGCUCcCCCAgGGCCcGa -3'
miRNA:   3'- -ACGCUGG---GUCGAGcGGGUgCCGGaCc -5'
3119 5' -62.7 NC_001493.1 + 9955 0.67 0.52219
Target:  5'- cGCG-CCgAGCUCGacgucCCCGCGGUucgagcgCUGGu -3'
miRNA:   3'- aCGCuGGgUCGAGC-----GGGUGCCG-------GACC- -5'
3119 5' -62.7 NC_001493.1 + 125509 0.67 0.52219
Target:  5'- cGCG-CCgAGCUCGacgucCCCGCGGUucgagcgCUGGu -3'
miRNA:   3'- aCGCuGGgUCGAGC-----GGGUGCCG-------GACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.