Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3119 | 5' | -62.7 | NC_001493.1 | + | 111846 | 1.1 | 0.00058 |
Target: 5'- cUGCGACCCAGCUCGCCCACGGCCUGGa -3' miRNA: 3'- -ACGCUGGGUCGAGCGGGUGCCGGACC- -5' |
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3119 | 5' | -62.7 | NC_001493.1 | + | 13405 | 0.66 | 0.551786 |
Target: 5'- gUGCGGCCgcgCGGUcgugggGCCCACGGUgaGGg -3' miRNA: 3'- -ACGCUGG---GUCGag----CGGGUGCCGgaCC- -5' |
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3119 | 5' | -62.7 | NC_001493.1 | + | 128959 | 0.66 | 0.551786 |
Target: 5'- gUGCGGCCgcgCGGUcgugggGCCCACGGUgaGGg -3' miRNA: 3'- -ACGCUGG---GUCGag----CGGGUGCCGgaCC- -5' |
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3119 | 5' | -62.7 | NC_001493.1 | + | 108779 | 0.66 | 0.558542 |
Target: 5'- aGCGGCgCGGCUCcgaUCACgggaggaggugccgGGCCUGGa -3' miRNA: 3'- aCGCUGgGUCGAGcg-GGUG--------------CCGGACC- -5' |
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3119 | 5' | -62.7 | NC_001493.1 | + | 47886 | 0.66 | 0.568233 |
Target: 5'- cGCgugGACCCAGUgcaugagcucgcggUCGgaCCCGCGGgUCUGGa -3' miRNA: 3'- aCG---CUGGGUCG--------------AGC--GGGUGCC-GGACC- -5' |
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3119 | 5' | -62.7 | NC_001493.1 | + | 102078 | 0.66 | 0.571149 |
Target: 5'- cGCGACCCuGGC-CGCCUcacaACGGggaUUGGu -3' miRNA: 3'- aCGCUGGG-UCGaGCGGG----UGCCg--GACC- -5' |
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3119 | 5' | -62.7 | NC_001493.1 | + | 28591 | 0.66 | 0.580893 |
Target: 5'- aGCGGCCguGCgcaucUCGgUCGCGuGCCUGu -3' miRNA: 3'- aCGCUGGguCG-----AGCgGGUGC-CGGACc -5' |
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3119 | 5' | -62.7 | NC_001493.1 | + | 18650 | 0.66 | 0.589693 |
Target: 5'- aGCGACCCGagucucaccccccGCUCGCaCCACa-CCcGGa -3' miRNA: 3'- aCGCUGGGU-------------CGAGCG-GGUGccGGaCC- -5' |
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3119 | 5' | -62.7 | NC_001493.1 | + | 32596 | 0.66 | 0.610306 |
Target: 5'- cGCGACCgGGaCgggCGUUUACGGUCcGGg -3' miRNA: 3'- aCGCUGGgUC-Ga--GCGGGUGCCGGaCC- -5' |
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3119 | 5' | -62.7 | NC_001493.1 | + | 112667 | 0.67 | 0.532626 |
Target: 5'- cGCG-UCgAGCcugCGCCCGagauccccgaUGGCCUGGa -3' miRNA: 3'- aCGCuGGgUCGa--GCGGGU----------GCCGGACC- -5' |
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3119 | 5' | -62.7 | NC_001493.1 | + | 44019 | 0.68 | 0.485873 |
Target: 5'- cUGCGGCUgauCGGCUCcCCCAgGGCCcGa -3' miRNA: 3'- -ACGCUGG---GUCGAGcGGGUgCCGGaCc -5' |
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3119 | 5' | -62.7 | NC_001493.1 | + | 61357 | 0.71 | 0.322511 |
Target: 5'- cGCGACCCAGUccaUCcCCCGCuuGGCC-GGu -3' miRNA: 3'- aCGCUGGGUCG---AGcGGGUG--CCGGaCC- -5' |
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3119 | 5' | -62.7 | NC_001493.1 | + | 69592 | 0.7 | 0.351696 |
Target: 5'- cGCGGCCuCGGCUCGUUCGCGaUCgGGg -3' miRNA: 3'- aCGCUGG-GUCGAGCGGGUGCcGGaCC- -5' |
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3119 | 5' | -62.7 | NC_001493.1 | + | 99500 | 0.7 | 0.359279 |
Target: 5'- aUGUaGCCUgGGCUCGCUCGCGGUCaGGg -3' miRNA: 3'- -ACGcUGGG-UCGAGCGGGUGCCGGaCC- -5' |
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3119 | 5' | -62.7 | NC_001493.1 | + | 44523 | 0.7 | 0.374785 |
Target: 5'- gUGCGACCCAGCgacuuacucaUCGCaC-CGGCgaGGu -3' miRNA: 3'- -ACGCUGGGUCG----------AGCGgGuGCCGgaCC- -5' |
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3119 | 5' | -62.7 | NC_001493.1 | + | 8122 | 0.69 | 0.41548 |
Target: 5'- --gGACCCggagAGCcCGaCCCGCGGCgUGGa -3' miRNA: 3'- acgCUGGG----UCGaGC-GGGUGCCGgACC- -5' |
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3119 | 5' | -62.7 | NC_001493.1 | + | 123677 | 0.69 | 0.41548 |
Target: 5'- --gGACCCggagAGCcCGaCCCGCGGCgUGGa -3' miRNA: 3'- acgCUGGG----UCGaGC-GGGUGCCGgACC- -5' |
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3119 | 5' | -62.7 | NC_001493.1 | + | 47361 | 0.68 | 0.476753 |
Target: 5'- cGUGACCCAGg-CGUUgACGGCCa-- -3' miRNA: 3'- aCGCUGGGUCgaGCGGgUGCCGGacc -5' |
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3119 | 5' | -62.7 | NC_001493.1 | + | 119750 | 0.68 | 0.476753 |
Target: 5'- aUGCGAUCCAGCgagUuUCgAUGGCCUGa -3' miRNA: 3'- -ACGCUGGGUCGa--GcGGgUGCCGGACc -5' |
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3119 | 5' | -62.7 | NC_001493.1 | + | 44488 | 0.66 | 0.610306 |
Target: 5'- --aGACCguGCUCGCggacgagcgguuCCGgGGCCUGc -3' miRNA: 3'- acgCUGGguCGAGCG------------GGUgCCGGACc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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