miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3120 5' -57.5 NC_001493.1 + 1549 0.72 0.490844
Target:  5'- cUCCAAaGaaUCCGCgaagGGGGAGGACGCGGc -3'
miRNA:   3'- aGGGUUcC--AGGUG----UCCCUCCUGUGCC- -5'
3120 5' -57.5 NC_001493.1 + 3231 0.67 0.794612
Target:  5'- gCCCGAGGUggagUCAgAGGcggacGAGGACcCGGa -3'
miRNA:   3'- aGGGUUCCA----GGUgUCC-----CUCCUGuGCC- -5'
3120 5' -57.5 NC_001493.1 + 5642 0.66 0.860855
Target:  5'- -gCC-GGGUUCAcCGGGGAGGAgACcaGGg -3'
miRNA:   3'- agGGuUCCAGGU-GUCCCUCCUgUG--CC- -5'
3120 5' -57.5 NC_001493.1 + 5773 0.69 0.669514
Target:  5'- cCCCGAGGUCgGCAuccagcgguguGGGAGGgguguccagcagGCGCGc -3'
miRNA:   3'- aGGGUUCCAGgUGU-----------CCCUCC------------UGUGCc -5'
3120 5' -57.5 NC_001493.1 + 7832 0.67 0.793717
Target:  5'- uUCCCcggggggAGGGUUaauCGGGGAGGuCACcGGg -3'
miRNA:   3'- -AGGG-------UUCCAGgu-GUCCCUCCuGUG-CC- -5'
3120 5' -57.5 NC_001493.1 + 9145 0.67 0.81219
Target:  5'- cUCCCGGGGauggCgGCgAGGGGGGAgGCc- -3'
miRNA:   3'- -AGGGUUCCa---GgUG-UCCCUCCUgUGcc -5'
3120 5' -57.5 NC_001493.1 + 10787 0.7 0.608911
Target:  5'- gUCCCGAGaGUCUcgACcGcGGAGGACcCGGa -3'
miRNA:   3'- -AGGGUUC-CAGG--UGuC-CCUCCUGuGCC- -5'
3120 5' -57.5 NC_001493.1 + 10925 0.66 0.837342
Target:  5'- cUCgCCGAGGUCUACAGGGcgcuCACu- -3'
miRNA:   3'- -AG-GGUUCCAGGUGUCCCuccuGUGcc -5'
3120 5' -57.5 NC_001493.1 + 11423 0.66 0.837342
Target:  5'- gUCCGGcGGUCgcgcuCACAGGGAGuaaucGAUGCGGa -3'
miRNA:   3'- aGGGUU-CCAG-----GUGUCCCUC-----CUGUGCC- -5'
3120 5' -57.5 NC_001493.1 + 13701 0.67 0.776461
Target:  5'- -aCCGcGGUCCGggguaAGGGGGG-UACGGg -3'
miRNA:   3'- agGGUuCCAGGUg----UCCCUCCuGUGCC- -5'
3120 5' -57.5 NC_001493.1 + 14925 0.71 0.578736
Target:  5'- aCCCGGcGGUCCgccccauggggGCAGGGGGGAa--GGg -3'
miRNA:   3'- aGGGUU-CCAGG-----------UGUCCCUCCUgugCC- -5'
3120 5' -57.5 NC_001493.1 + 16003 0.7 0.646315
Target:  5'- aCCCAGGGcUCCGucgUAGaGGAGGAUcaccuccuugccuuGCGGg -3'
miRNA:   3'- aGGGUUCC-AGGU---GUC-CCUCCUG--------------UGCC- -5'
3120 5' -57.5 NC_001493.1 + 16938 0.68 0.735821
Target:  5'- cCUCGGGGUCaCAucgagauggcccacCGGGGAGaGACACGcGg -3'
miRNA:   3'- aGGGUUCCAG-GU--------------GUCCCUC-CUGUGC-C- -5'
3120 5' -57.5 NC_001493.1 + 17458 0.66 0.8601
Target:  5'- gUCgAGGGUcCCACGGGccuugauaaccuuGAGGACGUGGg -3'
miRNA:   3'- aGGgUUCCA-GGUGUCC-------------CUCCUGUGCC- -5'
3120 5' -57.5 NC_001493.1 + 22015 0.67 0.794612
Target:  5'- aUCCgGAGGcaCCACgccgugucgAGGGAGGAUGUGGa -3'
miRNA:   3'- -AGGgUUCCa-GGUG---------UCCCUCCUGUGCC- -5'
3120 5' -57.5 NC_001493.1 + 26309 0.68 0.751171
Target:  5'- cCCUggGGUCCACcccccucucccauGGAcgcucucGGACACGGg -3'
miRNA:   3'- aGGGuuCCAGGUGuc-----------CCU-------CCUGUGCC- -5'
3120 5' -57.5 NC_001493.1 + 28071 0.78 0.232842
Target:  5'- gCUCGGGGagUCACAGGGAGGACuauCGGa -3'
miRNA:   3'- aGGGUUCCa-GGUGUCCCUCCUGu--GCC- -5'
3120 5' -57.5 NC_001493.1 + 29664 0.66 0.860855
Target:  5'- -gCCAGGGUCCGCGagcuGGAGca-ACGGg -3'
miRNA:   3'- agGGUUCCAGGUGUc---CCUCcugUGCC- -5'
3120 5' -57.5 NC_001493.1 + 30495 0.66 0.820744
Target:  5'- aCUCGGGGcCCugGucGGGGGGAU-CGGg -3'
miRNA:   3'- aGGGUUCCaGGugU--CCCUCCUGuGCC- -5'
3120 5' -57.5 NC_001493.1 + 30564 0.66 0.82913
Target:  5'- gCCC-GGGUCCA-AGGG-GGACAuCGa -3'
miRNA:   3'- aGGGuUCCAGGUgUCCCuCCUGU-GCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.