Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3120 | 5' | -57.5 | NC_001493.1 | + | 126479 | 0.66 | 0.837342 |
Target: 5'- cUCgCCGAGGUCUACAGGGcgcuCACu- -3' miRNA: 3'- -AG-GGUUCCAGGUGUCCCuccuGUGcc -5' |
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3120 | 5' | -57.5 | NC_001493.1 | + | 22015 | 0.67 | 0.794612 |
Target: 5'- aUCCgGAGGcaCCACgccgugucgAGGGAGGAUGUGGa -3' miRNA: 3'- -AGGgUUCCa-GGUG---------UCCCUCCUGUGCC- -5' |
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3120 | 5' | -57.5 | NC_001493.1 | + | 44245 | 0.67 | 0.81219 |
Target: 5'- aCCCGAuGGaucgcgCCGuauCGGGGGGGAUACcGGg -3' miRNA: 3'- aGGGUU-CCa-----GGU---GUCCCUCCUGUG-CC- -5' |
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3120 | 5' | -57.5 | NC_001493.1 | + | 9145 | 0.67 | 0.81219 |
Target: 5'- cUCCCGGGGauggCgGCgAGGGGGGAgGCc- -3' miRNA: 3'- -AGGGUUCCa---GgUG-UCCCUCCUgUGcc -5' |
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3120 | 5' | -57.5 | NC_001493.1 | + | 78778 | 0.67 | 0.81219 |
Target: 5'- cCCCAAccUCCuuCuGcGGAGGGCGCGGa -3' miRNA: 3'- aGGGUUccAGGu-GuC-CCUCCUGUGCC- -5' |
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3120 | 5' | -57.5 | NC_001493.1 | + | 105888 | 0.67 | 0.81219 |
Target: 5'- --aCGAGGUCC-CGGGG-GGugAgGGu -3' miRNA: 3'- aggGUUCCAGGuGUCCCuCCugUgCC- -5' |
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3120 | 5' | -57.5 | NC_001493.1 | + | 124700 | 0.67 | 0.81219 |
Target: 5'- cUCCCGGGGauggCgGCgAGGGGGGAgGCc- -3' miRNA: 3'- -AGGGUUCCa---GgUG-UCCCUCCUgUGcc -5' |
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3120 | 5' | -57.5 | NC_001493.1 | + | 87999 | 0.66 | 0.820744 |
Target: 5'- -aCCGAGGUCUGgAGGaGAucagcgGGugGCGGu -3' miRNA: 3'- agGGUUCCAGGUgUCC-CU------CCugUGCC- -5' |
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3120 | 5' | -57.5 | NC_001493.1 | + | 10925 | 0.66 | 0.837342 |
Target: 5'- cUCgCCGAGGUCUACAGGGcgcuCACu- -3' miRNA: 3'- -AG-GGUUCCAGGUGUCCCuccuGUGcc -5' |
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3120 | 5' | -57.5 | NC_001493.1 | + | 95477 | 0.67 | 0.776461 |
Target: 5'- aCCCGuucaacCCGauCGGGGAGGugACGGg -3' miRNA: 3'- aGGGUucca--GGU--GUCCCUCCugUGCC- -5' |
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3120 | 5' | -57.5 | NC_001493.1 | + | 90112 | 0.68 | 0.767192 |
Target: 5'- aUCUggGGUgCCACGGGGucGaGACGCGu -3' miRNA: 3'- aGGGuuCCA-GGUGUCCCu-C-CUGUGCc -5' |
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3120 | 5' | -57.5 | NC_001493.1 | + | 87128 | 0.68 | 0.767192 |
Target: 5'- cUCUC-AGGUCCGCAaccGGGGGcGCGCGc -3' miRNA: 3'- -AGGGuUCCAGGUGU---CCCUCcUGUGCc -5' |
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3120 | 5' | -57.5 | NC_001493.1 | + | 38388 | 0.75 | 0.35259 |
Target: 5'- cUCCCAuGGaCCACcGGGAGGAgCACGa -3' miRNA: 3'- -AGGGUuCCaGGUGuCCCUCCU-GUGCc -5' |
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3120 | 5' | -57.5 | NC_001493.1 | + | 87231 | 0.75 | 0.360389 |
Target: 5'- aCUCGggGGGUCCaacGCGGGGGGGAUAuCGGa -3' miRNA: 3'- aGGGU--UCCAGG---UGUCCCUCCUGU-GCC- -5' |
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3120 | 5' | -57.5 | NC_001493.1 | + | 87572 | 0.74 | 0.401153 |
Target: 5'- cUCCCGgggcgcucauGGGUUC-CGGGGGGGACACu- -3' miRNA: 3'- -AGGGU----------UCCAGGuGUCCCUCCUGUGcc -5' |
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3120 | 5' | -57.5 | NC_001493.1 | + | 81079 | 0.74 | 0.409651 |
Target: 5'- cUCCCAcAGGUCCACGcuccGGGGGACG-GGa -3' miRNA: 3'- -AGGGU-UCCAGGUGUc---CCUCCUGUgCC- -5' |
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3120 | 5' | -57.5 | NC_001493.1 | + | 114121 | 0.7 | 0.638226 |
Target: 5'- aCCCAacucgucuugaacGGGaCCAUcuGGGAGGACGCGc -3' miRNA: 3'- aGGGU-------------UCCaGGUGu-CCCUCCUGUGCc -5' |
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3120 | 5' | -57.5 | NC_001493.1 | + | 47776 | 0.68 | 0.719265 |
Target: 5'- aCCaCGAGGUUCACGGGG----CACGGg -3' miRNA: 3'- aGG-GUUCCAGGUGUCCCuccuGUGCC- -5' |
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3120 | 5' | -57.5 | NC_001493.1 | + | 39209 | 0.68 | 0.748311 |
Target: 5'- aCCCAGGuGga-ACgAGGGAgagGGACACGGa -3' miRNA: 3'- aGGGUUC-CaggUG-UCCCU---CCUGUGCC- -5' |
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3120 | 5' | -57.5 | NC_001493.1 | + | 26309 | 0.68 | 0.751171 |
Target: 5'- cCCUggGGUCCACcccccucucccauGGAcgcucucGGACACGGg -3' miRNA: 3'- aGGGuuCCAGGUGuc-----------CCU-------CCUGUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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