miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31203 3' -63.7 NC_006560.1 + 445 0.68 0.449203
Target:  5'- cGGcCUCC-GCGGccucCCCGGCGGGcGGCc -3'
miRNA:   3'- -CCaGAGGuCGUCc---GGGCCGCUC-CCGa -5'
31203 3' -63.7 NC_006560.1 + 1944 0.68 0.440536
Target:  5'- gGGUC-CCAGUccGGGgucgcgcccCCCagGGCGGGGGCg -3'
miRNA:   3'- -CCAGaGGUCG--UCC---------GGG--CCGCUCCCGa -5'
31203 3' -63.7 NC_006560.1 + 2082 0.72 0.247055
Target:  5'- cGGggUCCGG-GGGCCCGGCGucGGCg -3'
miRNA:   3'- -CCagAGGUCgUCCGGGCCGCucCCGa -5'
31203 3' -63.7 NC_006560.1 + 2595 0.69 0.374827
Target:  5'- cGUCgcacugCgCGGCGGGCagcaCGGCGcAGGGCa -3'
miRNA:   3'- cCAGa-----G-GUCGUCCGg---GCCGC-UCCCGa -5'
31203 3' -63.7 NC_006560.1 + 2721 0.7 0.351954
Target:  5'- cGGcCgCCAGCAGGCCCaggaacucgacGGCGccGGCg -3'
miRNA:   3'- -CCaGaGGUCGUCCGGG-----------CCGCucCCGa -5'
31203 3' -63.7 NC_006560.1 + 2916 0.66 0.578781
Target:  5'- cGGUC-CaGGCGGGCggGGCGGGGGa- -3'
miRNA:   3'- -CCAGaGgUCGUCCGggCCGCUCCCga -5'
31203 3' -63.7 NC_006560.1 + 3034 0.66 0.558579
Target:  5'- cGG-Cg-CAGCGGGCCCGaGgcgcggagcggccCGAGGGCg -3'
miRNA:   3'- -CCaGagGUCGUCCGGGC-C-------------GCUCCCGa -5'
31203 3' -63.7 NC_006560.1 + 3201 0.71 0.309242
Target:  5'- cGG-CUCgCAGUAGGCCucgagggcggCGGCGGcGGGCg -3'
miRNA:   3'- -CCaGAG-GUCGUCCGG----------GCCGCU-CCCGa -5'
31203 3' -63.7 NC_006560.1 + 3926 0.67 0.503058
Target:  5'- --cCUCCgccgcgggGGCGGcGCCgcggucggCGGCGAGGGCg -3'
miRNA:   3'- ccaGAGG--------UCGUC-CGG--------GCCGCUCCCGa -5'
31203 3' -63.7 NC_006560.1 + 4873 0.7 0.344553
Target:  5'- cGUCgacggCGGCGgcGGCgCCGGCGGGGGCc -3'
miRNA:   3'- cCAGag---GUCGU--CCG-GGCCGCUCCCGa -5'
31203 3' -63.7 NC_006560.1 + 4979 0.67 0.512312
Target:  5'- cGcCUCCgAGcCGGGUCCGaGcCGGGGGCg -3'
miRNA:   3'- cCaGAGG-UC-GUCCGGGC-C-GCUCCCGa -5'
31203 3' -63.7 NC_006560.1 + 5079 0.68 0.431114
Target:  5'- cGUCgCCGGCGugcGGCgcgccgcccggggUCGGCGGGGGCg -3'
miRNA:   3'- cCAGaGGUCGU---CCG-------------GGCCGCUCCCGa -5'
31203 3' -63.7 NC_006560.1 + 5142 0.68 0.449203
Target:  5'- --aCUCgCGGCgcgGGGCCCGggccggggccGCGGGGGCg -3'
miRNA:   3'- ccaGAG-GUCG---UCCGGGC----------CGCUCCCGa -5'
31203 3' -63.7 NC_006560.1 + 5473 0.73 0.220042
Target:  5'- cGGggCUCCgAGCGcGGUCgCGGCGAGGGUc -3'
miRNA:   3'- -CCa-GAGG-UCGU-CCGG-GCCGCUCCCGa -5'
31203 3' -63.7 NC_006560.1 + 10467 0.66 0.530083
Target:  5'- cGGgggCCAcGCcgccucgGGGCCCggGGCGGGGGCc -3'
miRNA:   3'- -CCagaGGU-CG-------UCCGGG--CCGCUCCCGa -5'
31203 3' -63.7 NC_006560.1 + 10568 0.81 0.067197
Target:  5'- cGGUCUCCAGCAccuGCCCGG-GGGGGUg -3'
miRNA:   3'- -CCAGAGGUCGUc--CGGGCCgCUCCCGa -5'
31203 3' -63.7 NC_006560.1 + 11626 0.68 0.457963
Target:  5'- aGUCgcuUCCGG-GGGCUCGGCGGuccGGGCg -3'
miRNA:   3'- cCAG---AGGUCgUCCGGGCCGCU---CCCGa -5'
31203 3' -63.7 NC_006560.1 + 11665 0.68 0.457963
Target:  5'- aGUCgcuUCCGG-GGGCUCGGCGGuccGGGCg -3'
miRNA:   3'- cCAG---AGGUCgUCCGGGCCGCU---CCCGa -5'
31203 3' -63.7 NC_006560.1 + 13551 0.69 0.374827
Target:  5'- ---gUCgGGCGGGUccgccuucugcuCCGGCGGGGGCa -3'
miRNA:   3'- ccagAGgUCGUCCG------------GGCCGCUCCCGa -5'
31203 3' -63.7 NC_006560.1 + 13998 0.66 0.566254
Target:  5'- cGGUCgguuuauuguucgaUCCga-GGGCCCGGCGgacGGGGUc -3'
miRNA:   3'- -CCAG--------------AGGucgUCCGGGCCGC---UCCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.