miRNA display CGI


Results 1 - 20 of 128 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31203 3' -63.7 NC_006560.1 + 32432 0.66 0.582648
Target:  5'- aGGgggCCGGgGGGCCgGGgcucccccacggggcCGGGGGCUg -3'
miRNA:   3'- -CCagaGGUCgUCCGGgCC---------------GCUCCCGA- -5'
31203 3' -63.7 NC_006560.1 + 5473 0.73 0.220042
Target:  5'- cGGggCUCCgAGCGcGGUCgCGGCGAGGGUc -3'
miRNA:   3'- -CCa-GAGG-UCGU-CCGG-GCCGCUCCCGa -5'
31203 3' -63.7 NC_006560.1 + 124551 0.72 0.241441
Target:  5'- cGGagagCCAGCuguGGGCCCugcugcGGCGGGGGCUg -3'
miRNA:   3'- -CCaga-GGUCG---UCCGGG------CCGCUCCCGA- -5'
31203 3' -63.7 NC_006560.1 + 142734 0.72 0.241441
Target:  5'- gGGgggC-CCGGCGGaGCCCGGCGcccgggccccgGGGGCg -3'
miRNA:   3'- -CCa--GaGGUCGUC-CGGGCCGC-----------UCCCGa -5'
31203 3' -63.7 NC_006560.1 + 2082 0.72 0.247055
Target:  5'- cGGggUCCGG-GGGCCCGGCGucGGCg -3'
miRNA:   3'- -CCagAGGUCgUCCGGGCCGCucCCGa -5'
31203 3' -63.7 NC_006560.1 + 39290 0.72 0.252776
Target:  5'- cGGUCUCggCGGCguugugucccGGGCCgGGCG-GGGCg -3'
miRNA:   3'- -CCAGAG--GUCG----------UCCGGgCCGCuCCCGa -5'
31203 3' -63.7 NC_006560.1 + 56960 0.72 0.252776
Target:  5'- cGGUCcCCAGCAuGGCguacagggCCGGCccGGGGGCg -3'
miRNA:   3'- -CCAGaGGUCGU-CCG--------GGCCG--CUCCCGa -5'
31203 3' -63.7 NC_006560.1 + 26475 0.72 0.258607
Target:  5'- cGGgagCggCCGGCGGcCCCGGCGgGGGGCg -3'
miRNA:   3'- -CCa--Ga-GGUCGUCcGGGCCGC-UCCCGa -5'
31203 3' -63.7 NC_006560.1 + 99591 0.72 0.263947
Target:  5'- -aUCUCCGGCGcuuccccGGCgCGGCGgGGGGCg -3'
miRNA:   3'- ccAGAGGUCGU-------CCGgGCCGC-UCCCGa -5'
31203 3' -63.7 NC_006560.1 + 32945 0.73 0.209962
Target:  5'- cGUCgccgCCGGCGGcgacgggaaGgCCGGCGAGGGCa -3'
miRNA:   3'- cCAGa---GGUCGUC---------CgGGCCGCUCCCGa -5'
31203 3' -63.7 NC_006560.1 + 55304 0.74 0.200282
Target:  5'- uGGUCaCCuGCuGGCCCacggggucgcggGGCGGGGGCUc -3'
miRNA:   3'- -CCAGaGGuCGuCCGGG------------CCGCUCCCGA- -5'
31203 3' -63.7 NC_006560.1 + 35296 0.74 0.19559
Target:  5'- cGGggUCCGG-GGGCgCGGCGGGGGCUc -3'
miRNA:   3'- -CCagAGGUCgUCCGgGCCGCUCCCGA- -5'
31203 3' -63.7 NC_006560.1 + 10568 0.81 0.067197
Target:  5'- cGGUCUCCAGCAccuGCCCGG-GGGGGUg -3'
miRNA:   3'- -CCAGAGGUCGUc--CGGGCCgCUCCCGa -5'
31203 3' -63.7 NC_006560.1 + 101977 0.79 0.080344
Target:  5'- aGGcgCUCCAGCAGGCCCGcgaaggagccGgGGGGGCg -3'
miRNA:   3'- -CCa-GAGGUCGUCCGGGC----------CgCUCCCGa -5'
31203 3' -63.7 NC_006560.1 + 32061 0.75 0.165366
Target:  5'- uGGUCUCUGggggcaggggccGCAGGgCgGGCGGGGGCg -3'
miRNA:   3'- -CCAGAGGU------------CGUCCgGgCCGCUCCCGa -5'
31203 3' -63.7 NC_006560.1 + 131664 0.75 0.173546
Target:  5'- cGUCgCCGGCgAGGCCCuGGCGggcggGGGGCUg -3'
miRNA:   3'- cCAGaGGUCG-UCCGGG-CCGC-----UCCCGA- -5'
31203 3' -63.7 NC_006560.1 + 15782 0.75 0.173546
Target:  5'- cGGgggCCGGCAgGGCCCGGCGccGGCg -3'
miRNA:   3'- -CCagaGGUCGU-CCGGGCCGCucCCGa -5'
31203 3' -63.7 NC_006560.1 + 21248 0.74 0.17777
Target:  5'- gGGgacgCCGcGCAGGCgCGGUGAGGGCg -3'
miRNA:   3'- -CCaga-GGU-CGUCCGgGCCGCUCCCGa -5'
31203 3' -63.7 NC_006560.1 + 28191 0.74 0.19559
Target:  5'- uGGUCccgggCCGGC-GGCCCgGGCGGGGaGCg -3'
miRNA:   3'- -CCAGa----GGUCGuCCGGG-CCGCUCC-CGa -5'
31203 3' -63.7 NC_006560.1 + 129332 0.74 0.19559
Target:  5'- cGUC-CCGaccGUGGGCCCGGCGGGGGa- -3'
miRNA:   3'- cCAGaGGU---CGUCCGGGCCGCUCCCga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.