miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31203 5' -58 NC_006560.1 + 76703 0.77 0.254684
Target:  5'- cGGGGgCGCCuggaagUCGCCGgcGGCCCUGGAg -3'
miRNA:   3'- -UUUCgGUGG------AGCGGCauCUGGGACCU- -5'
31203 5' -58 NC_006560.1 + 129626 0.76 0.267098
Target:  5'- -cGGCCGCCcCGCCGgcgGGGCCgUGGGc -3'
miRNA:   3'- uuUCGGUGGaGCGGCa--UCUGGgACCU- -5'
31203 5' -58 NC_006560.1 + 126277 0.76 0.279997
Target:  5'- -uGGCCACCUCGUCGUAGAugggcuccCCCUcGGu -3'
miRNA:   3'- uuUCGGUGGAGCGGCAUCU--------GGGA-CCu -5'
31203 5' -58 NC_006560.1 + 118688 0.75 0.307271
Target:  5'- cGGGCgAgCUCGCCG-AGGCCCUGGu -3'
miRNA:   3'- uUUCGgUgGAGCGGCaUCUGGGACCu -5'
31203 5' -58 NC_006560.1 + 35270 0.74 0.367767
Target:  5'- -cGGCCGCCgCGCCGggcggcgGGGCCCgGGGu -3'
miRNA:   3'- uuUCGGUGGaGCGGCa------UCUGGGaCCU- -5'
31203 5' -58 NC_006560.1 + 49316 0.73 0.384117
Target:  5'- --cGUCGCCgucgaugaCGCCGUcggAGGCCCUGGAc -3'
miRNA:   3'- uuuCGGUGGa-------GCGGCA---UCUGGGACCU- -5'
31203 5' -58 NC_006560.1 + 83308 0.72 0.435958
Target:  5'- --cGCCACCcgCGCCcuccucgGGACCCUGGu -3'
miRNA:   3'- uuuCGGUGGa-GCGGca-----UCUGGGACCu -5'
31203 5' -58 NC_006560.1 + 69136 0.72 0.442266
Target:  5'- --cGCCugCUCGCCcugcugcaccagacGUGGGCCCUGa- -3'
miRNA:   3'- uuuCGGugGAGCGG--------------CAUCUGGGACcu -5'
31203 5' -58 NC_006560.1 + 70343 0.72 0.454116
Target:  5'- gGAGGCCcCCgacCGCCugGGGCCCUGGGc -3'
miRNA:   3'- -UUUCGGuGGa--GCGGcaUCUGGGACCU- -5'
31203 5' -58 NC_006560.1 + 123457 0.72 0.472676
Target:  5'- --uGCgGCCUgGCCGUGGACCUcuacgcgcUGGGg -3'
miRNA:   3'- uuuCGgUGGAgCGGCAUCUGGG--------ACCU- -5'
31203 5' -58 NC_006560.1 + 72107 0.71 0.501209
Target:  5'- -cGGCCgGCCUCGCCGcGGccGCCCUGcGGc -3'
miRNA:   3'- uuUCGG-UGGAGCGGCaUC--UGGGAC-CU- -5'
31203 5' -58 NC_006560.1 + 47332 0.71 0.520645
Target:  5'- cAGGCCACCccCGCgGUGGuGCCCaGGAa -3'
miRNA:   3'- uUUCGGUGGa-GCGgCAUC-UGGGaCCU- -5'
31203 5' -58 NC_006560.1 + 23737 0.71 0.530474
Target:  5'- cGAGGCCGCCgucgcCGCCGUGcgcGCCgUGGGc -3'
miRNA:   3'- -UUUCGGUGGa----GCGGCAUc--UGGgACCU- -5'
31203 5' -58 NC_006560.1 + 54013 0.7 0.560338
Target:  5'- --cGcCCACCUCGCUGUGGGUCgaGGAg -3'
miRNA:   3'- uuuC-GGUGGAGCGGCAUCUGGgaCCU- -5'
31203 5' -58 NC_006560.1 + 63686 0.7 0.560338
Target:  5'- -cAGCUucucgaacuCCUCGCCGUGGAagCUGGAg -3'
miRNA:   3'- uuUCGGu--------GGAGCGGCAUCUggGACCU- -5'
31203 5' -58 NC_006560.1 + 82594 0.7 0.580506
Target:  5'- -cGGCCGCggCUCGCCccgAGGCCCcGGAc -3'
miRNA:   3'- uuUCGGUG--GAGCGGca-UCUGGGaCCU- -5'
31203 5' -58 NC_006560.1 + 26922 0.7 0.580506
Target:  5'- -uGGCCGCC-CGCCGgggAGGCCgCgGGGc -3'
miRNA:   3'- uuUCGGUGGaGCGGCa--UCUGG-GaCCU- -5'
31203 5' -58 NC_006560.1 + 23494 0.7 0.590649
Target:  5'- --cGCCGCCgacgcCGCCGcggAGugCCUGGc -3'
miRNA:   3'- uuuCGGUGGa----GCGGCa--UCugGGACCu -5'
31203 5' -58 NC_006560.1 + 33771 0.7 0.590649
Target:  5'- cGGGUCGCCUCGCg--GGGCCgUGGGg -3'
miRNA:   3'- uUUCGGUGGAGCGgcaUCUGGgACCU- -5'
31203 5' -58 NC_006560.1 + 123214 0.7 0.594715
Target:  5'- cGGGCCGuCCUCGCCGacuucagccucguGACCCUGa- -3'
miRNA:   3'- uUUCGGU-GGAGCGGCau-----------CUGGGACcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.