miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31203 5' -58 NC_006560.1 + 10468 0.67 0.761274
Target:  5'- gGGGGCCACgC-CGCCucgGGGCCCgGGGc -3'
miRNA:   3'- -UUUCGGUG-GaGCGGca-UCUGGGaCCU- -5'
31203 5' -58 NC_006560.1 + 17666 0.68 0.682393
Target:  5'- cGGGCgGCCUcgucccgggCGCCGUgGGGCCCgGGGg -3'
miRNA:   3'- uUUCGgUGGA---------GCGGCA-UCUGGGaCCU- -5'
31203 5' -58 NC_006560.1 + 18871 0.67 0.742055
Target:  5'- cGGGGCCGCCgccccgccCGCCGUGGGCggcGGAg -3'
miRNA:   3'- -UUUCGGUGGa-------GCGGCAUCUGggaCCU- -5'
31203 5' -58 NC_006560.1 + 22195 0.68 0.682393
Target:  5'- cGGGGCCGCCgUCGCCGc-GGCCCg--- -3'
miRNA:   3'- -UUUCGGUGG-AGCGGCauCUGGGaccu -5'
31203 5' -58 NC_006560.1 + 22532 0.7 0.600822
Target:  5'- --cGCCGCCggCGCCGUcGACUC-GGAc -3'
miRNA:   3'- uuuCGGUGGa-GCGGCAuCUGGGaCCU- -5'
31203 5' -58 NC_006560.1 + 23494 0.7 0.590649
Target:  5'- --cGCCGCCgacgcCGCCGcggAGugCCUGGc -3'
miRNA:   3'- uuuCGGUGGa----GCGGCa--UCugGGACCu -5'
31203 5' -58 NC_006560.1 + 23566 0.69 0.651882
Target:  5'- -cGGCgACCUCGCCGccGugCCcGGGc -3'
miRNA:   3'- uuUCGgUGGAGCGGCauCugGGaCCU- -5'
31203 5' -58 NC_006560.1 + 23737 0.71 0.530474
Target:  5'- cGAGGCCGCCgucgcCGCCGUGcgcGCCgUGGGc -3'
miRNA:   3'- -UUUCGGUGGa----GCGGCAUc--UGGgACCU- -5'
31203 5' -58 NC_006560.1 + 24685 0.67 0.722453
Target:  5'- --cGCCGCCUCGUCGUcguGGacgccgugccGCCCgaGGAg -3'
miRNA:   3'- uuuCGGUGGAGCGGCA---UC----------UGGGa-CCU- -5'
31203 5' -58 NC_006560.1 + 25186 0.67 0.751717
Target:  5'- -cGGCCGCgCgCGCCGggcccgAGGCCCUGc- -3'
miRNA:   3'- uuUCGGUG-GaGCGGCa-----UCUGGGACcu -5'
31203 5' -58 NC_006560.1 + 26922 0.7 0.580506
Target:  5'- -uGGCCGCC-CGCCGgggAGGCCgCgGGGc -3'
miRNA:   3'- uuUCGGUGGaGCGGCa--UCUGG-GaCCU- -5'
31203 5' -58 NC_006560.1 + 30032 0.68 0.696519
Target:  5'- cGAGGCCgaggaggcggugcgcGCCggcacCGCCGUGGACUucauCUGGAc -3'
miRNA:   3'- -UUUCGG---------------UGGa----GCGGCAUCUGG----GACCU- -5'
31203 5' -58 NC_006560.1 + 33771 0.7 0.590649
Target:  5'- cGGGUCGCCUCGCg--GGGCCgUGGGg -3'
miRNA:   3'- uUUCGGUGGAGCGgcaUCUGGgACCU- -5'
31203 5' -58 NC_006560.1 + 35270 0.74 0.367767
Target:  5'- -cGGCCGCCgCGCCGggcggcgGGGCCCgGGGu -3'
miRNA:   3'- uuUCGGUGGaGCGGCa------UCUGGGaCCU- -5'
31203 5' -58 NC_006560.1 + 44404 0.69 0.621229
Target:  5'- cGGAGCCGCgUCuCCGcgAGGCCCUGa- -3'
miRNA:   3'- -UUUCGGUGgAGcGGCa-UCUGGGACcu -5'
31203 5' -58 NC_006560.1 + 44497 0.68 0.692493
Target:  5'- cGAGgCGCCUCGUCaaggcccGGGCCCUGGc -3'
miRNA:   3'- uUUCgGUGGAGCGGca-----UCUGGGACCu -5'
31203 5' -58 NC_006560.1 + 44771 0.67 0.770716
Target:  5'- --cGUgGCCaUCGCCGagcGGGCUCUGGGg -3'
miRNA:   3'- uuuCGgUGG-AGCGGCa--UCUGGGACCU- -5'
31203 5' -58 NC_006560.1 + 46114 0.67 0.732297
Target:  5'- aAAAGCCACCUccCGCCGguuGGCCa-GGc -3'
miRNA:   3'- -UUUCGGUGGA--GCGGCau-CUGGgaCCu -5'
31203 5' -58 NC_006560.1 + 47332 0.71 0.520645
Target:  5'- cAGGCCACCccCGCgGUGGuGCCCaGGAa -3'
miRNA:   3'- uUUCGGUGGa-GCGgCAUC-UGGGaCCU- -5'
31203 5' -58 NC_006560.1 + 49316 0.73 0.384117
Target:  5'- --cGUCGCCgucgaugaCGCCGUcggAGGCCCUGGAc -3'
miRNA:   3'- uuuCGGUGGa-------GCGGCA---UCUGGGACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.