miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31214 3' -57.7 NC_006560.1 + 24393 0.66 0.852035
Target:  5'- gCC-CGAGGacgugcGCguGCUGGUGCUCUa-- -3'
miRNA:   3'- -GGuGCUCU------CGguCGACCACGGGAaga -5'
31214 3' -57.7 NC_006560.1 + 12067 0.66 0.844127
Target:  5'- aCCACGcGGGGgCAGC-GGUcGCCCggCg -3'
miRNA:   3'- -GGUGC-UCUCgGUCGaCCA-CGGGaaGa -5'
31214 3' -57.7 NC_006560.1 + 4988 0.66 0.844127
Target:  5'- gCCGgGuccGAGCCgggGGCggGGUGCCCgUCg -3'
miRNA:   3'- -GGUgCu--CUCGG---UCGa-CCACGGGaAGa -5'
31214 3' -57.7 NC_006560.1 + 68683 0.66 0.844127
Target:  5'- -gGCGcGGGCCAGCaacUGGgcgacGCUCUUCUc -3'
miRNA:   3'- ggUGCuCUCGGUCG---ACCa----CGGGAAGA- -5'
31214 3' -57.7 NC_006560.1 + 56907 0.66 0.836029
Target:  5'- cUCGCG-GAGCCGGCggUGGaGCCCc--- -3'
miRNA:   3'- -GGUGCuCUCGGUCG--ACCaCGGGaaga -5'
31214 3' -57.7 NC_006560.1 + 3062 0.66 0.827747
Target:  5'- gCC-CGAGGGCgCGGCcGGaGCCCggCUc -3'
miRNA:   3'- -GGuGCUCUCG-GUCGaCCaCGGGaaGA- -5'
31214 3' -57.7 NC_006560.1 + 126569 0.66 0.819291
Target:  5'- -gGCGAGGGCCAcGC-GGacGCCCgUCUg -3'
miRNA:   3'- ggUGCUCUCGGU-CGaCCa-CGGGaAGA- -5'
31214 3' -57.7 NC_006560.1 + 111768 0.66 0.819291
Target:  5'- aCCGCGAGAGCUggacgAGCUGGagagcGCgCCg--- -3'
miRNA:   3'- -GGUGCUCUCGG-----UCGACCa----CG-GGaaga -5'
31214 3' -57.7 NC_006560.1 + 101992 0.66 0.819291
Target:  5'- cCCGCGAagGAGCCGGggGGgcgGUCCUcCg -3'
miRNA:   3'- -GGUGCU--CUCGGUCgaCCa--CGGGAaGa -5'
31214 3' -57.7 NC_006560.1 + 48804 0.66 0.819291
Target:  5'- aCCugGAGcaggcgcGCCAGCUGucGUGCCUgUUCc -3'
miRNA:   3'- -GGugCUCu------CGGUCGAC--CACGGG-AAGa -5'
31214 3' -57.7 NC_006560.1 + 58669 0.66 0.810666
Target:  5'- gCCGCaucuGGGAGUCGGC-GGUGCUCggCg -3'
miRNA:   3'- -GGUG----CUCUCGGUCGaCCACGGGaaGa -5'
31214 3' -57.7 NC_006560.1 + 114182 0.66 0.810666
Target:  5'- gUCGCGGGcaaCCGGCUGG-GCCCg--- -3'
miRNA:   3'- -GGUGCUCuc-GGUCGACCaCGGGaaga -5'
31214 3' -57.7 NC_006560.1 + 111359 0.67 0.801882
Target:  5'- gCCACGcgcguggcccGGGCCAcGCUGGUGgCCgagCUg -3'
miRNA:   3'- -GGUGCu---------CUCGGU-CGACCACgGGaa-GA- -5'
31214 3' -57.7 NC_006560.1 + 43961 0.67 0.801882
Target:  5'- cCCGCGGGccCgGGCgUGGUGCCCg--- -3'
miRNA:   3'- -GGUGCUCucGgUCG-ACCACGGGaaga -5'
31214 3' -57.7 NC_006560.1 + 120067 0.67 0.792946
Target:  5'- cUCGCG-GGGCCcuacCUGGUGCCCg--- -3'
miRNA:   3'- -GGUGCuCUCGGuc--GACCACGGGaaga -5'
31214 3' -57.7 NC_006560.1 + 112631 0.67 0.783868
Target:  5'- uCCACGGGAGCgAGCacGUGUUCUg-- -3'
miRNA:   3'- -GGUGCUCUCGgUCGacCACGGGAaga -5'
31214 3' -57.7 NC_006560.1 + 94718 0.67 0.783868
Target:  5'- gCCACGAGAcggcgguggcgGCCgucgAGCUGGcGCUgUUCg -3'
miRNA:   3'- -GGUGCUCU-----------CGG----UCGACCaCGGgAAGa -5'
31214 3' -57.7 NC_006560.1 + 47317 0.67 0.774655
Target:  5'- gCCGCGcccaAGGGCCAgGCcacccccgcggUGGUGCCCa--- -3'
miRNA:   3'- -GGUGC----UCUCGGU-CG-----------ACCACGGGaaga -5'
31214 3' -57.7 NC_006560.1 + 94547 0.67 0.764376
Target:  5'- gCCGCGAG-GCCGacgcccuGCUGGagGCCCa--- -3'
miRNA:   3'- -GGUGCUCuCGGU-------CGACCa-CGGGaaga -5'
31214 3' -57.7 NC_006560.1 + 72370 0.67 0.755861
Target:  5'- cUCGCGGGGGCgCcGCUGGcgcUGCCCg--- -3'
miRNA:   3'- -GGUGCUCUCG-GuCGACC---ACGGGaaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.