miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31215 5' -57.8 NC_006560.1 + 10580 0.68 0.716515
Target:  5'- cCUGCCcgggggGGUGGagggagacccacgacGgCCGCAGcgGCCCGCAg -3'
miRNA:   3'- -GAUGGa-----CCACU---------------UgGGCGUC--UGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 11904 0.68 0.712569
Target:  5'- -gGCCgacgacGGcguccgcGAAgCCGCGGGCCCGCAg -3'
miRNA:   3'- gaUGGa-----CCa------CUUgGGCGUCUGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 146893 0.68 0.712569
Target:  5'- -gGCCUGGgccagggccgccUGGGCCCGggcuugacucCGGGCCUGCGu -3'
miRNA:   3'- gaUGGACC------------ACUUGGGC----------GUCUGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 68454 0.69 0.692686
Target:  5'- --cCCUGGg--GCCggCGCGGACCCGCc -3'
miRNA:   3'- gauGGACCacuUGG--GCGUCUGGGCGu -5'
31215 5' -57.8 NC_006560.1 + 146749 0.69 0.692686
Target:  5'- -aGCCUGaGUcuGGGCCCGggucuGGGCCCGCGc -3'
miRNA:   3'- gaUGGAC-CA--CUUGGGCg----UCUGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 27301 0.69 0.682666
Target:  5'- -cGCggGGaGGGCCCGCccGGACCCGCc -3'
miRNA:   3'- gaUGgaCCaCUUGGGCG--UCUGGGCGu -5'
31215 5' -57.8 NC_006560.1 + 35495 0.69 0.682666
Target:  5'- -gGCuCUGGUGGcgcgccGCCCGgAGGCCgCGCc -3'
miRNA:   3'- gaUG-GACCACU------UGGGCgUCUGG-GCGu -5'
31215 5' -57.8 NC_006560.1 + 26930 0.69 0.672605
Target:  5'- -cGCCgGG-GAGgCCGCGGGgCCGCGg -3'
miRNA:   3'- gaUGGaCCaCUUgGGCGUCUgGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 14613 0.69 0.662511
Target:  5'- -cGCUUGGcGcGGCCCuCGGGCCCGCGg -3'
miRNA:   3'- gaUGGACCaC-UUGGGcGUCUGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 125440 0.69 0.651381
Target:  5'- -cACCUGGUGAccuucaucgggcgGCaCCGCAcGCCCGaCGa -3'
miRNA:   3'- gaUGGACCACU-------------UG-GGCGUcUGGGC-GU- -5'
31215 5' -57.8 NC_006560.1 + 75397 0.7 0.632119
Target:  5'- -gACCUGGcgGAgaaGCUCGCGGcccggcgcGCCCGCGa -3'
miRNA:   3'- gaUGGACCa-CU---UGGGCGUC--------UGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 78241 0.7 0.632119
Target:  5'- -cGCCUGGggucgggccGGGCCC-CcGACCCGCAg -3'
miRNA:   3'- gaUGGACCa--------CUUGGGcGuCUGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 123019 0.7 0.618937
Target:  5'- -gACCUGG-GGcgcuacaucggccaGCUgGCGGGCCCGCGc -3'
miRNA:   3'- gaUGGACCaCU--------------UGGgCGUCUGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 134446 0.7 0.615896
Target:  5'- -gGCCcGGcUGAcggcgcgggcggccCCCGCGGGCCCGCGg -3'
miRNA:   3'- gaUGGaCC-ACUu-------------GGGCGUCUGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 75703 0.7 0.611844
Target:  5'- -cGCCUGGacuggGGGCCCGCGuucGGCgCCGCc -3'
miRNA:   3'- gaUGGACCa----CUUGGGCGU---CUG-GGCGu -5'
31215 5' -57.8 NC_006560.1 + 86427 0.7 0.581561
Target:  5'- -cGCCc-GUGAACCCGUAGACCgaguUGCAg -3'
miRNA:   3'- gaUGGacCACUUGGGCGUCUGG----GCGU- -5'
31215 5' -57.8 NC_006560.1 + 70447 0.7 0.581561
Target:  5'- --cCCUGGcGGGCCUGCGGG-CCGCGa -3'
miRNA:   3'- gauGGACCaCUUGGGCGUCUgGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 142615 0.7 0.581561
Target:  5'- -gGCCccaGGUGAGCgCGCGGGCCCa-- -3'
miRNA:   3'- gaUGGa--CCACUUGgGCGUCUGGGcgu -5'
31215 5' -57.8 NC_006560.1 + 16207 0.71 0.52212
Target:  5'- -cACCggcGGagccGGGCCCGCGGGCCCgGCAu -3'
miRNA:   3'- gaUGGa--CCa---CUUGGGCGUCUGGG-CGU- -5'
31215 5' -57.8 NC_006560.1 + 931 0.72 0.512427
Target:  5'- -gGCCUaGGgGAGCCCgGCAGcCCCGCc -3'
miRNA:   3'- gaUGGA-CCaCUUGGG-CGUCuGGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.