miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31215 5' -57.8 NC_006560.1 + 931 0.72 0.512427
Target:  5'- -gGCCUaGGgGAGCCCgGCAGcCCCGCc -3'
miRNA:   3'- gaUGGA-CCaCUUGGG-CGUCuGGGCGu -5'
31215 5' -57.8 NC_006560.1 + 3296 0.66 0.813476
Target:  5'- -cGCCgggcgggcgggcGGUGAGCgCCGCGGGCCgggggCGCGg -3'
miRNA:   3'- gaUGGa-----------CCACUUG-GGCGUCUGG-----GCGU- -5'
31215 5' -57.8 NC_006560.1 + 9988 0.72 0.474451
Target:  5'- -aGCCgcgGGUGGuacaggcaggGCUCGUAGAUCCGCAu -3'
miRNA:   3'- gaUGGa--CCACU----------UGGGCGUCUGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 10580 0.68 0.716515
Target:  5'- cCUGCCcgggggGGUGGagggagacccacgacGgCCGCAGcgGCCCGCAg -3'
miRNA:   3'- -GAUGGa-----CCACU---------------UgGGCGUC--UGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 11904 0.68 0.712569
Target:  5'- -gGCCgacgacGGcguccgcGAAgCCGCGGGCCCGCAg -3'
miRNA:   3'- gaUGGa-----CCa------CUUgGGCGUCUGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 14613 0.69 0.662511
Target:  5'- -cGCUUGGcGcGGCCCuCGGGCCCGCGg -3'
miRNA:   3'- gaUGGACCaC-UUGGGcGUCUGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 16207 0.71 0.52212
Target:  5'- -cACCggcGGagccGGGCCCGCGGGCCCgGCAu -3'
miRNA:   3'- gaUGGa--CCa---CUUGGGCGUCUGGG-CGU- -5'
31215 5' -57.8 NC_006560.1 + 16405 0.67 0.760942
Target:  5'- -cGCCUGGagccgcGGugCCGCccGCCCGCGc -3'
miRNA:   3'- gaUGGACCa-----CUugGGCGucUGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 23790 0.66 0.848223
Target:  5'- -cGCCgc-UGcuGGCCCGCAG-CCCGCGg -3'
miRNA:   3'- gaUGGaccAC--UUGGGCGUCuGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 23902 0.66 0.832068
Target:  5'- -cGCCgacgccGCCCGCGcGGCCCGCAa -3'
miRNA:   3'- gaUGGaccacuUGGGCGU-CUGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 25165 0.73 0.42906
Target:  5'- uCUACCUGGcgcUGGACCgCGCGG-CCgCGCGc -3'
miRNA:   3'- -GAUGGACC---ACUUGG-GCGUCuGG-GCGU- -5'
31215 5' -57.8 NC_006560.1 + 26676 0.67 0.797679
Target:  5'- -gGCCgcgggggGGgacgGGGCCCGCGacgaGCCCGCGc -3'
miRNA:   3'- gaUGGa------CCa---CUUGGGCGUc---UGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 26761 0.67 0.77957
Target:  5'- cCUugCgauucGAACCCGCGuGCCCGCGg -3'
miRNA:   3'- -GAugGacca-CUUGGGCGUcUGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 26930 0.69 0.672605
Target:  5'- -cGCCgGG-GAGgCCGCGGGgCCGCGg -3'
miRNA:   3'- gaUGGaCCaCUUgGGCGUCUgGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 27089 0.73 0.420292
Target:  5'- -gGCCUGG-GGACCgaaGCGGGCCuCGCGa -3'
miRNA:   3'- gaUGGACCaCUUGGg--CGUCUGG-GCGU- -5'
31215 5' -57.8 NC_006560.1 + 27301 0.69 0.682666
Target:  5'- -cGCggGGaGGGCCCGCccGGACCCGCc -3'
miRNA:   3'- gaUGgaCCaCUUGGGCG--UCUGGGCGu -5'
31215 5' -57.8 NC_006560.1 + 31601 0.73 0.455996
Target:  5'- gCUGCCUGGccgacgcgGAGCCgcaGUGGGCCCGCc -3'
miRNA:   3'- -GAUGGACCa-------CUUGGg--CGUCUGGGCGu -5'
31215 5' -57.8 NC_006560.1 + 32881 0.66 0.82372
Target:  5'- -gGCCcGGgGAGgCCGCGGgggggcgcGCCCGCGg -3'
miRNA:   3'- gaUGGaCCaCUUgGGCGUC--------UGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 33308 0.76 0.282467
Target:  5'- -gGCCcGGgGGGCCCGCcGGCCCGCGg -3'
miRNA:   3'- gaUGGaCCaCUUGGGCGuCUGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 35069 0.66 0.848223
Target:  5'- -aGCCUcGG-GGGCCCaucUGGGCCCGCGc -3'
miRNA:   3'- gaUGGA-CCaCUUGGGc--GUCUGGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.