miRNA display CGI


Results 1 - 20 of 76 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31215 5' -57.8 NC_006560.1 + 23790 0.66 0.848223
Target:  5'- -cGCCgc-UGcuGGCCCGCAG-CCCGCGg -3'
miRNA:   3'- gaUGGaccAC--UUGGGCGUCuGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 9988 0.72 0.474451
Target:  5'- -aGCCgcgGGUGGuacaggcaggGCUCGUAGAUCCGCAu -3'
miRNA:   3'- gaUGGa--CCACU----------UGGGCGUCUGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 123068 0.72 0.480998
Target:  5'- --cCCUGGUGAucccggcccucggcGCCCGCuucgucgagauGGCCCGCGc -3'
miRNA:   3'- gauGGACCACU--------------UGGGCGu----------CUGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 111991 0.72 0.493271
Target:  5'- -gACCUGGUc--CCCGCgccgggccagccGGACCCGCGg -3'
miRNA:   3'- gaUGGACCAcuuGGGCG------------UCUGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 120453 0.72 0.500895
Target:  5'- -gGCCgUGGUGcugcucggcuccACCCGCGGGCCgCGCAu -3'
miRNA:   3'- gaUGG-ACCACu-----------UGGGCGUCUGG-GCGU- -5'
31215 5' -57.8 NC_006560.1 + 931 0.72 0.512427
Target:  5'- -gGCCUaGGgGAGCCCgGCAGcCCCGCc -3'
miRNA:   3'- gaUGGA-CCaCUUGGG-CGUCuGGGCGu -5'
31215 5' -57.8 NC_006560.1 + 16207 0.71 0.52212
Target:  5'- -cACCggcGGagccGGGCCCGCGGGCCCgGCAu -3'
miRNA:   3'- gaUGGa--CCa---CUUGGGCGUCUGGG-CGU- -5'
31215 5' -57.8 NC_006560.1 + 70447 0.7 0.581561
Target:  5'- --cCCUGGcGGGCCUGCGGG-CCGCGa -3'
miRNA:   3'- gauGGACCaCUUGGGCGUCUgGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 86427 0.7 0.581561
Target:  5'- -cGCCc-GUGAACCCGUAGACCgaguUGCAg -3'
miRNA:   3'- gaUGGacCACUUGGGCGUCUGG----GCGU- -5'
31215 5' -57.8 NC_006560.1 + 107081 0.72 0.474451
Target:  5'- gCUACgUGGUGAcccacgGCCCcCuGGCCCGCGg -3'
miRNA:   3'- -GAUGgACCACU------UGGGcGuCUGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 97551 0.73 0.455996
Target:  5'- -cGCCUGGUGcGAgCUGCAGAaCCGCGa -3'
miRNA:   3'- gaUGGACCAC-UUgGGCGUCUgGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 31601 0.73 0.455996
Target:  5'- gCUGCCUGGccgacgcgGAGCCgcaGUGGGCCCGCc -3'
miRNA:   3'- -GAUGGACCa-------CUUGGg--CGUCUGGGCGu -5'
31215 5' -57.8 NC_006560.1 + 33308 0.76 0.282467
Target:  5'- -gGCCcGGgGGGCCCGCcGGCCCGCGg -3'
miRNA:   3'- gaUGGaCCaCUUGGGCGuCUGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 120077 0.76 0.309706
Target:  5'- cCUACCUGGU--GCCCGCGGAggucCCCGgGg -3'
miRNA:   3'- -GAUGGACCAcuUGGGCGUCU----GGGCgU- -5'
31215 5' -57.8 NC_006560.1 + 57078 0.74 0.370042
Target:  5'- -cGCCUGGgccAGCgCCGuCAGGCCCGCGg -3'
miRNA:   3'- gaUGGACCac-UUG-GGC-GUCUGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 115345 0.74 0.38633
Target:  5'- -aGCCUGGUGccGCCCGUguucgaGGGCCCGUc -3'
miRNA:   3'- gaUGGACCACu-UGGGCG------UCUGGGCGu -5'
31215 5' -57.8 NC_006560.1 + 130156 0.74 0.403084
Target:  5'- -gGCCUGGcUGccCCCGaGGACCCGCGa -3'
miRNA:   3'- gaUGGACC-ACuuGGGCgUCUGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 27089 0.73 0.420292
Target:  5'- -gGCCUGG-GGACCgaaGCGGGCCuCGCGa -3'
miRNA:   3'- gaUGGACCaCUUGGg--CGUCUGG-GCGU- -5'
31215 5' -57.8 NC_006560.1 + 25165 0.73 0.42906
Target:  5'- uCUACCUGGcgcUGGACCgCGCGG-CCgCGCGc -3'
miRNA:   3'- -GAUGGACC---ACUUGG-GCGUCuGG-GCGU- -5'
31215 5' -57.8 NC_006560.1 + 107898 0.73 0.446915
Target:  5'- -gACCcgGGUGGccgcggccaaucGCCCGCGG-CCCGCGu -3'
miRNA:   3'- gaUGGa-CCACU------------UGGGCGUCuGGGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.