miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31231 5' -58.3 NC_006560.1 + 26078 0.67 0.717052
Target:  5'- cGGGCGGaACC-CGGGcgGCCCGGCGc- -3'
miRNA:   3'- uUCUGCC-UGGcGUCCa-UGGGCUGCua -5'
31231 5' -58.3 NC_006560.1 + 2228 0.68 0.707148
Target:  5'- uAGACGGGCCGCAGcGgcgcACCCaGGCc-- -3'
miRNA:   3'- uUCUGCCUGGCGUC-Ca---UGGG-CUGcua -5'
31231 5' -58.3 NC_006560.1 + 12782 0.68 0.707148
Target:  5'- uGGGcCGaGACCGCGGGgagggACCCGuCGGc -3'
miRNA:   3'- -UUCuGC-CUGGCGUCCa----UGGGCuGCUa -5'
31231 5' -58.3 NC_006560.1 + 5353 0.68 0.697182
Target:  5'- -cGGCGGGCCGUcguccGGGU--CCGGCGAg -3'
miRNA:   3'- uuCUGCCUGGCG-----UCCAugGGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 127612 0.68 0.697182
Target:  5'- cGAGugGGucCCcCGGGUacACCCGAUGGUg -3'
miRNA:   3'- -UUCugCCu-GGcGUCCA--UGGGCUGCUA- -5'
31231 5' -58.3 NC_006560.1 + 132694 0.68 0.687162
Target:  5'- cGGGGCGGACCgGCAGccgaaagACCCGGCu-- -3'
miRNA:   3'- -UUCUGCCUGG-CGUCca-----UGGGCUGcua -5'
31231 5' -58.3 NC_006560.1 + 71380 0.68 0.687162
Target:  5'- cGGGCGGGCCGgGGGUcgcauaaacAgCCGugGGg -3'
miRNA:   3'- uUCUGCCUGGCgUCCA---------UgGGCugCUa -5'
31231 5' -58.3 NC_006560.1 + 10297 0.68 0.683141
Target:  5'- gGGGGCGGGCCGcCGGGgaccgccgccgcgACCCG-CGGc -3'
miRNA:   3'- -UUCUGCCUGGC-GUCCa------------UGGGCuGCUa -5'
31231 5' -58.3 NC_006560.1 + 125170 0.68 0.677097
Target:  5'- uGGGCGGACgCGCGGG---CCGGCGGc -3'
miRNA:   3'- uUCUGCCUG-GCGUCCaugGGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 33203 0.68 0.656866
Target:  5'- gAAGGCGG-CCGCGGGgcagACggggcaggCCGGCGAc -3'
miRNA:   3'- -UUCUGCCuGGCGUCCa---UG--------GGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 11239 0.69 0.646717
Target:  5'- -cGACGGgcGCCGCuug-GCCCGACGGg -3'
miRNA:   3'- uuCUGCC--UGGCGuccaUGGGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 102021 0.69 0.636557
Target:  5'- -cGcCGGACCGCAGGUG-CgGugGAg -3'
miRNA:   3'- uuCuGCCUGGCGUCCAUgGgCugCUa -5'
31231 5' -58.3 NC_006560.1 + 99721 0.69 0.626394
Target:  5'- cGGGugGGggggcgcguacGCCGcCGGGgcCCCGACGAc -3'
miRNA:   3'- -UUCugCC-----------UGGC-GUCCauGGGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 149336 0.69 0.620297
Target:  5'- gGAGACGGcggcggcuccuccccGCCGCGGGgaggaGCCgGGCGGc -3'
miRNA:   3'- -UUCUGCC---------------UGGCGUCCa----UGGgCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 18937 0.69 0.595959
Target:  5'- -cGGCGuGCCGCGcGGgGCCCGGCGGg -3'
miRNA:   3'- uuCUGCcUGGCGU-CCaUGGGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 33119 0.69 0.595959
Target:  5'- gAAGGCGG-CCGCGGGgaagGCggggaaggCCGGCGAg -3'
miRNA:   3'- -UUCUGCCuGGCGUCCa---UG--------GGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 98309 0.69 0.595959
Target:  5'- -cGugGGGCUGCuGGU-CCUGGCGGg -3'
miRNA:   3'- uuCugCCUGGCGuCCAuGGGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 132221 0.69 0.595959
Target:  5'- gGAGGCGGugUugcGCGGGgcCCUGGCGGg -3'
miRNA:   3'- -UUCUGCCugG---CGUCCauGGGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 111044 0.69 0.595959
Target:  5'- cGGGACGGACCGCAc---CCCGuCGAg -3'
miRNA:   3'- -UUCUGCCUGGCGUccauGGGCuGCUa -5'
31231 5' -58.3 NC_006560.1 + 37566 0.69 0.594947
Target:  5'- -uGAUGGAUCGCAGGUGCugcauggCCGccGCGGUg -3'
miRNA:   3'- uuCUGCCUGGCGUCCAUG-------GGC--UGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.