miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31231 5' -58.3 NC_006560.1 + 83515 0.76 0.259267
Target:  5'- gGGGGCGGGCCGCGGGcgcgcGCCCG-CGGa -3'
miRNA:   3'- -UUCUGCCUGGCGUCCa----UGGGCuGCUa -5'
31231 5' -58.3 NC_006560.1 + 57331 0.76 0.27179
Target:  5'- -cGGCGGugCGCGGGgcagGCCgCGGCGAa -3'
miRNA:   3'- uuCUGCCugGCGUCCa---UGG-GCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 28427 0.75 0.326737
Target:  5'- cGGGGCGGGCCGagggggAGGcGCCCGGCGGa -3'
miRNA:   3'- -UUCUGCCUGGCg-----UCCaUGGGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 5173 0.74 0.34094
Target:  5'- gGGGGCGGGCCGCGGcgacggcGgcCCCGACGGc -3'
miRNA:   3'- -UUCUGCCUGGCGUC-------CauGGGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 144355 0.74 0.3417
Target:  5'- cGAGACGG-CCGCGGG-GCCgCGGCGGc -3'
miRNA:   3'- -UUCUGCCuGGCGUCCaUGG-GCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 34561 0.74 0.349365
Target:  5'- gGGGGCGG-CCGgGGGUGCgCGACGGg -3'
miRNA:   3'- -UUCUGCCuGGCgUCCAUGgGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 65117 0.74 0.36506
Target:  5'- cGGGGCGGGCCGCGGGgg--CGGCGAa -3'
miRNA:   3'- -UUCUGCCUGGCGUCCauggGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 55368 0.73 0.3895
Target:  5'- gGGGACGG-UCGCgGGGUAgCCGACGAg -3'
miRNA:   3'- -UUCUGCCuGGCG-UCCAUgGGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 81258 0.73 0.40467
Target:  5'- aGAGACGGAgCGCgAGGggcacacuggcgGCCCGGCGGc -3'
miRNA:   3'- -UUCUGCCUgGCG-UCCa-----------UGGGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 112575 0.73 0.406378
Target:  5'- cGGGGCguucgaGGACCGCGGGUAcCCCGugGu- -3'
miRNA:   3'- -UUCUG------CCUGGCGUCCAU-GGGCugCua -5'
31231 5' -58.3 NC_006560.1 + 72839 0.73 0.406378
Target:  5'- cAGACGcGACCGagccGUGCCCGACGAc -3'
miRNA:   3'- uUCUGC-CUGGCguc-CAUGGGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 65058 0.73 0.406378
Target:  5'- gGGGGCagGGGCCGCGGGUGCC-GAUGGg -3'
miRNA:   3'- -UUCUG--CCUGGCGUCCAUGGgCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 108759 0.72 0.432538
Target:  5'- gGAGACGGgcaGCCGCGGGaggugGCCUGcACGAg -3'
miRNA:   3'- -UUCUGCC---UGGCGUCCa----UGGGC-UGCUa -5'
31231 5' -58.3 NC_006560.1 + 125457 0.72 0.432538
Target:  5'- cGGGCGGcACCGCAc--GCCCGACGAg -3'
miRNA:   3'- uUCUGCC-UGGCGUccaUGGGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 33173 0.72 0.432538
Target:  5'- gAAGGCGG-CCGCGGGgaagggGCCCG-CGGg -3'
miRNA:   3'- -UUCUGCCuGGCGUCCa-----UGGGCuGCUa -5'
31231 5' -58.3 NC_006560.1 + 83945 0.72 0.441473
Target:  5'- -cGGCGGAcCCGgAGGcgcaGCCCGACGAc -3'
miRNA:   3'- uuCUGCCU-GGCgUCCa---UGGGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 26668 0.72 0.441473
Target:  5'- gGGGACgGGGCCGCGGGgggggacgggGCCCgcGACGAg -3'
miRNA:   3'- -UUCUG-CCUGGCGUCCa---------UGGG--CUGCUa -5'
31231 5' -58.3 NC_006560.1 + 33650 0.72 0.457817
Target:  5'- gGGGGCGG-CCGCGGGccgcuuaggcgaGCCCGGCGGg -3'
miRNA:   3'- -UUCUGCCuGGCGUCCa-----------UGGGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 74615 0.72 0.459653
Target:  5'- cGGGCGGACCucccggGCGGGUggaccugccuGCCCGACGc- -3'
miRNA:   3'- uUCUGCCUGG------CGUCCA----------UGGGCUGCua -5'
31231 5' -58.3 NC_006560.1 + 142687 0.72 0.459653
Target:  5'- -cGGCGGACCGgAGGgggcGCCCGGCc-- -3'
miRNA:   3'- uuCUGCCUGGCgUCCa---UGGGCUGcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.