miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31231 5' -58.3 NC_006560.1 + 527 0.66 0.819291
Target:  5'- gGGGGCGGcggccgGCCGCgccccGGGUcCCCGGCGu- -3'
miRNA:   3'- -UUCUGCC------UGGCG-----UCCAuGGGCUGCua -5'
31231 5' -58.3 NC_006560.1 + 1294 0.66 0.783868
Target:  5'- -cGcCGGGCCGCccGGGUuccGCCCGcACGGc -3'
miRNA:   3'- uuCuGCCUGGCG--UCCA---UGGGC-UGCUa -5'
31231 5' -58.3 NC_006560.1 + 2071 0.66 0.783868
Target:  5'- -cGGCGcGGCgGCGGGguccggggGCCCGGCGu- -3'
miRNA:   3'- uuCUGC-CUGgCGUCCa-------UGGGCUGCua -5'
31231 5' -58.3 NC_006560.1 + 2228 0.68 0.707148
Target:  5'- uAGACGGGCCGCAGcGgcgcACCCaGGCc-- -3'
miRNA:   3'- uUCUGCCUGGCGUC-Ca---UGGG-CUGcua -5'
31231 5' -58.3 NC_006560.1 + 3089 0.67 0.726884
Target:  5'- cGGGCGGGCCGCAGcGcgcgGCCa-GCGAg -3'
miRNA:   3'- uUCUGCCUGGCGUC-Ca---UGGgcUGCUa -5'
31231 5' -58.3 NC_006560.1 + 3257 0.67 0.720994
Target:  5'- cGGGCGGcgcgcggcgccagccGCCGCGGGggucggGCCCGcCGGg -3'
miRNA:   3'- uUCUGCC---------------UGGCGUCCa-----UGGGCuGCUa -5'
31231 5' -58.3 NC_006560.1 + 3420 0.67 0.736636
Target:  5'- cGGGCGGGCgGCGGGcgcgggcGCCCG-CGGg -3'
miRNA:   3'- uUCUGCCUGgCGUCCa------UGGGCuGCUa -5'
31231 5' -58.3 NC_006560.1 + 5173 0.74 0.34094
Target:  5'- gGGGGCGGGCCGCGGcgacggcGgcCCCGACGGc -3'
miRNA:   3'- -UUCUGCCUGGCGUC-------CauGGGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 5353 0.68 0.697182
Target:  5'- -cGGCGGGCCGUcguccGGGU--CCGGCGAg -3'
miRNA:   3'- uuCUGCCUGGCG-----UCCAugGGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 9134 0.67 0.746297
Target:  5'- -cGAgGGcCCGCAGGUcUUCGGCGAc -3'
miRNA:   3'- uuCUgCCuGGCGUCCAuGGGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 10297 0.68 0.683141
Target:  5'- gGGGGCGGGCCGcCGGGgaccgccgccgcgACCCG-CGGc -3'
miRNA:   3'- -UUCUGCCUGGC-GUCCa------------UGGGCuGCUa -5'
31231 5' -58.3 NC_006560.1 + 11239 0.69 0.646717
Target:  5'- -cGACGGgcGCCGCuug-GCCCGACGGg -3'
miRNA:   3'- uuCUGCC--UGGCGuccaUGGGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 11923 0.67 0.736636
Target:  5'- gAAGccGCGGGcCCGCAGGaggGgCCGGCGGg -3'
miRNA:   3'- -UUC--UGCCU-GGCGUCCa--UgGGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 12782 0.68 0.707148
Target:  5'- uGGGcCGaGACCGCGGGgagggACCCGuCGGc -3'
miRNA:   3'- -UUCuGC-CUGGCGUCCa----UGGGCuGCUa -5'
31231 5' -58.3 NC_006560.1 + 13146 0.67 0.736636
Target:  5'- cAGGCGGA-CGUAGGUcCCCG-CGGUc -3'
miRNA:   3'- uUCUGCCUgGCGUCCAuGGGCuGCUA- -5'
31231 5' -58.3 NC_006560.1 + 13484 0.66 0.790237
Target:  5'- -cGACGGGCaCGCugggggucuggaacGGGUuCUCGACGAa -3'
miRNA:   3'- uuCUGCCUG-GCG--------------UCCAuGGGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 15776 0.67 0.765316
Target:  5'- cGGGCccggGGGCCgGCAGG-GCCCGGCGc- -3'
miRNA:   3'- uUCUG----CCUGG-CGUCCaUGGGCUGCua -5'
31231 5' -58.3 NC_006560.1 + 15962 0.66 0.810666
Target:  5'- gGAGuACGG-CCGCAcGUGCCCGGaGAg -3'
miRNA:   3'- -UUC-UGCCuGGCGUcCAUGGGCUgCUa -5'
31231 5' -58.3 NC_006560.1 + 16305 0.67 0.736636
Target:  5'- -cGGCGGGgCGCGGGcccgcGCCCG-CGAg -3'
miRNA:   3'- uuCUGCCUgGCGUCCa----UGGGCuGCUa -5'
31231 5' -58.3 NC_006560.1 + 18937 0.69 0.595959
Target:  5'- -cGGCGuGCCGCGcGGgGCCCGGCGGg -3'
miRNA:   3'- uuCUGCcUGGCGU-CCaUGGGCUGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.