miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31239 5' -55.8 NC_006560.1 + 146290 0.67 0.879455
Target:  5'- aCGCCGCGGGGgcgCggucgGCGUcCACgUggugggucuuccgcGCACa -3'
miRNA:   3'- -GCGGCGCCCUa--Ga----UGCA-GUGgA--------------UGUG- -5'
31239 5' -55.8 NC_006560.1 + 94430 0.67 0.879455
Target:  5'- aCGCCGcCGGGuUCUcggaggcggcgcggGCGcgCGCgCUGCGCg -3'
miRNA:   3'- -GCGGC-GCCCuAGA--------------UGCa-GUG-GAUGUG- -5'
31239 5' -55.8 NC_006560.1 + 123269 0.67 0.867113
Target:  5'- -cCCGCGGGcaguUCUGCGUCGC--GCAg -3'
miRNA:   3'- gcGGCGCCCu---AGAUGCAGUGgaUGUg -5'
31239 5' -55.8 NC_006560.1 + 54649 0.67 0.867113
Target:  5'- gGCgCGCGGGAUgaGgGUCGCggggGCGCg -3'
miRNA:   3'- gCG-GCGCCCUAgaUgCAGUGga--UGUG- -5'
31239 5' -55.8 NC_006560.1 + 131180 0.67 0.858802
Target:  5'- cCGCCGCGGGggCgccCGgcCGCCUguccccgGCGCu -3'
miRNA:   3'- -GCGGCGCCCuaGau-GCa-GUGGA-------UGUG- -5'
31239 5' -55.8 NC_006560.1 + 121180 0.68 0.851818
Target:  5'- cCGCgGCGaGGAagUACGUgGCgUGCAUg -3'
miRNA:   3'- -GCGgCGC-CCUagAUGCAgUGgAUGUG- -5'
31239 5' -55.8 NC_006560.1 + 7314 0.68 0.847073
Target:  5'- uGCCGCGGGGgcguggagaugcgcgUCUA--UCGCCgGCGCc -3'
miRNA:   3'- gCGGCGCCCU---------------AGAUgcAGUGGaUGUG- -5'
31239 5' -55.8 NC_006560.1 + 68428 0.68 0.84387
Target:  5'- gGCgGCGGGA-CUGCG-CACCgcgGC-Cg -3'
miRNA:   3'- gCGgCGCCCUaGAUGCaGUGGa--UGuG- -5'
31239 5' -55.8 NC_006560.1 + 146778 0.68 0.835731
Target:  5'- gCGCCugaguCGGGGUCUGgGUCugggUCUGCGCc -3'
miRNA:   3'- -GCGGc----GCCCUAGAUgCAGu---GGAUGUG- -5'
31239 5' -55.8 NC_006560.1 + 3661 0.68 0.835731
Target:  5'- gCGCCGcCGGGGaCgcggAgGUCGCCgcgcagGCGCa -3'
miRNA:   3'- -GCGGC-GCCCUaGa---UgCAGUGGa-----UGUG- -5'
31239 5' -55.8 NC_006560.1 + 110182 0.68 0.827408
Target:  5'- cCGUgGCGGGGUaCUACGUgGCgUggaucGCGCg -3'
miRNA:   3'- -GCGgCGCCCUA-GAUGCAgUGgA-----UGUG- -5'
31239 5' -55.8 NC_006560.1 + 52914 0.68 0.827408
Target:  5'- gGCCGaCGGGcagGUCUGCcggCGCCUGgACc -3'
miRNA:   3'- gCGGC-GCCC---UAGAUGca-GUGGAUgUG- -5'
31239 5' -55.8 NC_006560.1 + 85588 0.68 0.827408
Target:  5'- gCGCgGCGGGcgCgGCGUCgaGCUcGCGCa -3'
miRNA:   3'- -GCGgCGCCCuaGaUGCAG--UGGaUGUG- -5'
31239 5' -55.8 NC_006560.1 + 38097 0.68 0.826566
Target:  5'- uGCCGCGGGuuUCUggggcgGCGUUuguggggGCCcGCACg -3'
miRNA:   3'- gCGGCGCCCu-AGA------UGCAG-------UGGaUGUG- -5'
31239 5' -55.8 NC_006560.1 + 120476 0.68 0.818908
Target:  5'- -cCCGCGGGccgcgcAUC-GCGgccCACCUGCACg -3'
miRNA:   3'- gcGGCGCCC------UAGaUGCa--GUGGAUGUG- -5'
31239 5' -55.8 NC_006560.1 + 44818 0.68 0.818908
Target:  5'- cCGCCGCGcGGcagGUCUGCGcggCACCccCGCc -3'
miRNA:   3'- -GCGGCGC-CC---UAGAUGCa--GUGGauGUG- -5'
31239 5' -55.8 NC_006560.1 + 71484 0.68 0.818908
Target:  5'- -aUCGCGGGAUCgugGUCACCgggGCGa -3'
miRNA:   3'- gcGGCGCCCUAGaugCAGUGGa--UGUg -5'
31239 5' -55.8 NC_006560.1 + 24934 0.68 0.818908
Target:  5'- gGCCGCGGcGG-CaACGUCGCUaccgcgUGCGCa -3'
miRNA:   3'- gCGGCGCC-CUaGaUGCAGUGG------AUGUG- -5'
31239 5' -55.8 NC_006560.1 + 99902 0.68 0.810239
Target:  5'- gCGgCGCGGGGUUcAUGUCgGCCUcgggGCGCu -3'
miRNA:   3'- -GCgGCGCCCUAGaUGCAG-UGGA----UGUG- -5'
31239 5' -55.8 NC_006560.1 + 41705 0.68 0.809363
Target:  5'- gCGCCGCGGG-UCcGCGUgggcggccacgaaCGCCgcCACg -3'
miRNA:   3'- -GCGGCGCCCuAGaUGCA-------------GUGGauGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.