miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3124 3' -55.7 NC_001493.1 + 28170 0.66 0.923987
Target:  5'- gGAgCCGAUCgC--GGGuuAUGGCGGCGg -3'
miRNA:   3'- gCUgGGCUAGgGaaCCC--UAUCGCUGC- -5'
3124 3' -55.7 NC_001493.1 + 113410 0.66 0.900341
Target:  5'- gCGACCgCGcGUCUCUUucGGGGUAGCucGCGg -3'
miRNA:   3'- -GCUGG-GC-UAGGGAA--CCCUAUCGc-UGC- -5'
3124 3' -55.7 NC_001493.1 + 87316 0.66 0.893184
Target:  5'- gGugCCGAUCCCg-GGGGUGaccauacGCGcGCGc -3'
miRNA:   3'- gCugGGCUAGGGaaCCCUAU-------CGC-UGC- -5'
3124 3' -55.7 NC_001493.1 + 93261 0.67 0.885751
Target:  5'- aCGAUCCGAacgugcaUCCgCUcggcgcagggugcUGGGAUGGCuGCGa -3'
miRNA:   3'- -GCUGGGCU-------AGG-GA-------------ACCCUAUCGcUGC- -5'
3124 3' -55.7 NC_001493.1 + 21117 0.67 0.858034
Target:  5'- uCGcCCCuGucuUCCacgGGGAUGGCGGCGc -3'
miRNA:   3'- -GCuGGG-Cu--AGGgaaCCCUAUCGCUGC- -5'
3124 3' -55.7 NC_001493.1 + 26452 0.67 0.858034
Target:  5'- gGACCCcaggGGUaUCCgucaGGGGUAGCGACu -3'
miRNA:   3'- gCUGGG----CUA-GGGaa--CCCUAUCGCUGc -5'
3124 3' -55.7 NC_001493.1 + 67542 0.68 0.8257
Target:  5'- gGACCCGAguaUCUUGGGAacacGGUGAuCGa -3'
miRNA:   3'- gCUGGGCUag-GGAACCCUa---UCGCU-GC- -5'
3124 3' -55.7 NC_001493.1 + 95475 0.69 0.762699
Target:  5'- aGACCCGuucaaCCCgaucGGGGaGGUGACGg -3'
miRNA:   3'- gCUGGGCua---GGGaa--CCCUaUCGCUGC- -5'
3124 3' -55.7 NC_001493.1 + 42005 0.7 0.753166
Target:  5'- -cGCCCGAUCCuCUUccaGGGAcUGGCGAa- -3'
miRNA:   3'- gcUGGGCUAGG-GAA---CCCU-AUCGCUgc -5'
3124 3' -55.7 NC_001493.1 + 33667 0.71 0.694061
Target:  5'- aGACCCcaacUgCCUUGuGGGUGGUGGCGg -3'
miRNA:   3'- gCUGGGcu--AgGGAAC-CCUAUCGCUGC- -5'
3124 3' -55.7 NC_001493.1 + 110594 0.72 0.613692
Target:  5'- uCGACCCGAggugcUCgCCgcgauguguggcggGGGGUGGCGACu -3'
miRNA:   3'- -GCUGGGCU-----AG-GGaa------------CCCUAUCGCUGc -5'
3124 3' -55.7 NC_001493.1 + 107586 0.72 0.592312
Target:  5'- uGACaCCGGUCCCgggGGGGUGGcCGGa- -3'
miRNA:   3'- gCUG-GGCUAGGGaa-CCCUAUC-GCUgc -5'
3124 3' -55.7 NC_001493.1 + 124691 0.8 0.226819
Target:  5'- gCGACCgCGcUCCCg-GGGAUGGCGGCGa -3'
miRNA:   3'- -GCUGG-GCuAGGGaaCCCUAUCGCUGC- -5'
3124 3' -55.7 NC_001493.1 + 9136 0.8 0.226819
Target:  5'- gCGACCgCGcUCCCg-GGGAUGGCGGCGa -3'
miRNA:   3'- -GCUGG-GCuAGGGaaCCCUAUCGCUGC- -5'
3124 3' -55.7 NC_001493.1 + 4979 0.97 0.019267
Target:  5'- aCGACCCGAU-CCUUGGGAUAGCGACGa -3'
miRNA:   3'- -GCUGGGCUAgGGAACCCUAUCGCUGC- -5'
3124 3' -55.7 NC_001493.1 + 120533 1.1 0.002706
Target:  5'- aCGACCCGAUCCCUUGGGAUAGCGACGa -3'
miRNA:   3'- -GCUGGGCUAGGGAACCCUAUCGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.