miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3124 5' -55 NC_001493.1 + 26487 0.65 0.921968
Target:  5'- aGACGAC----UGCCCGCGaGGAAGaCg- -3'
miRNA:   3'- -CUGCUGugauACGGGUGC-CCUUC-Gac -5'
3124 5' -55 NC_001493.1 + 111831 0.66 0.916187
Target:  5'- aGACGACcgggGCUgGUGCUCGCGGGuacGCc- -3'
miRNA:   3'- -CUGCUG----UGA-UACGGGUGCCCuu-CGac -5'
3124 5' -55 NC_001493.1 + 63724 0.66 0.903881
Target:  5'- cACGGCGac--GCCCACGGG-AGCc- -3'
miRNA:   3'- cUGCUGUgauaCGGGUGCCCuUCGac -5'
3124 5' -55 NC_001493.1 + 49778 0.66 0.90324
Target:  5'- uGACGGugguguacaacccCcCUGUGCUgGgGGGAAGCUGu -3'
miRNA:   3'- -CUGCU-------------GuGAUACGGgUgCCCUUCGAC- -5'
3124 5' -55 NC_001493.1 + 121041 0.66 0.897361
Target:  5'- -cCGGuCACgGUGCCCACGGGu-GCc- -3'
miRNA:   3'- cuGCU-GUGaUACGGGUGCCCuuCGac -5'
3124 5' -55 NC_001493.1 + 5486 0.66 0.890601
Target:  5'- -cCGuCACgGUGCCCACGGGu-GCc- -3'
miRNA:   3'- cuGCuGUGaUACGGGUGCCCuuCGac -5'
3124 5' -55 NC_001493.1 + 31957 0.66 0.890601
Target:  5'- aGACGGCAUggggggGUCCAUGGGugaAAGCa- -3'
miRNA:   3'- -CUGCUGUGaua---CGGGUGCCC---UUCGac -5'
3124 5' -55 NC_001493.1 + 24080 0.66 0.890601
Target:  5'- cAC-ACACUccUGUuacaCCACGGGggGCUGg -3'
miRNA:   3'- cUGcUGUGAu-ACG----GGUGCCCuuCGAC- -5'
3124 5' -55 NC_001493.1 + 63062 0.66 0.890601
Target:  5'- cGCGAauguCACgaaGCCCACGGG-AGCg- -3'
miRNA:   3'- cUGCU----GUGauaCGGGUGCCCuUCGac -5'
3124 5' -55 NC_001493.1 + 79576 0.67 0.876373
Target:  5'- -uCGGC-C-GUGCCCACGG-AGGCUGc -3'
miRNA:   3'- cuGCUGuGaUACGGGUGCCcUUCGAC- -5'
3124 5' -55 NC_001493.1 + 60457 0.67 0.876373
Target:  5'- aGugGACGgUGUcGUgCACGGGggGUg- -3'
miRNA:   3'- -CugCUGUgAUA-CGgGUGCCCuuCGac -5'
3124 5' -55 NC_001493.1 + 63193 0.67 0.871175
Target:  5'- aACGACACcgcgaaugucacgaaGCCCACGGG-AGCg- -3'
miRNA:   3'- cUGCUGUGaua------------CGGGUGCCCuUCGac -5'
3124 5' -55 NC_001493.1 + 63822 0.67 0.868914
Target:  5'- -cCGGCG--AUGCCCGCGGG-AGCc- -3'
miRNA:   3'- cuGCUGUgaUACGGGUGCCCuUCGac -5'
3124 5' -55 NC_001493.1 + 63765 0.67 0.868914
Target:  5'- -cCGGCG--AUGCCCGCGGG-AGCc- -3'
miRNA:   3'- cuGCUGUgaUACGGGUGCCCuUCGac -5'
3124 5' -55 NC_001493.1 + 93676 0.67 0.853339
Target:  5'- cGGCGuCACUGUcaaCgACGGGAGGCUc -3'
miRNA:   3'- -CUGCuGUGAUAcg-GgUGCCCUUCGAc -5'
3124 5' -55 NC_001493.1 + 29850 0.68 0.845234
Target:  5'- cGCGuuGCggaGCuCCAgGGGAAGCUGg -3'
miRNA:   3'- cUGCugUGauaCG-GGUgCCCUUCGAC- -5'
3124 5' -55 NC_001493.1 + 34030 0.68 0.828426
Target:  5'- uGAgGACGCg--GCCUAUGcGGAGGCg- -3'
miRNA:   3'- -CUgCUGUGauaCGGGUGC-CCUUCGac -5'
3124 5' -55 NC_001493.1 + 100947 0.68 0.810873
Target:  5'- aACGACACUGUGUgugCCAgGGGGgauaacggccguGGUUGg -3'
miRNA:   3'- cUGCUGUGAUACG---GGUgCCCU------------UCGAC- -5'
3124 5' -55 NC_001493.1 + 37435 0.68 0.810873
Target:  5'- cGAgGAC-CU-UGCCCAUGGGGAuCUGg -3'
miRNA:   3'- -CUgCUGuGAuACGGGUGCCCUUcGAC- -5'
3124 5' -55 NC_001493.1 + 63137 0.68 0.801838
Target:  5'- cGCGACGgUGaaGCCCACGGG-GGCg- -3'
miRNA:   3'- cUGCUGUgAUa-CGGGUGCCCuUCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.