Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3125 | 5' | -53.6 | NC_001493.1 | + | 57419 | 0.66 | 0.966545 |
Target: 5'- -cAGCGCCCU-UCGuu--UCCGGGCa -3' miRNA: 3'- cuUUGCGGGAgAGCuacuAGGCCUGc -5' |
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3125 | 5' | -53.6 | NC_001493.1 | + | 131264 | 0.66 | 0.96557 |
Target: 5'- ----aGCuCUUCUCGGUGAgcgcaucgagacccUCCGGGCc -3' miRNA: 3'- cuuugCG-GGAGAGCUACU--------------AGGCCUGc -5' |
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3125 | 5' | -53.6 | NC_001493.1 | + | 15214 | 0.66 | 0.96322 |
Target: 5'- -uAACGCaCCacgagCUCGuagagGGUCCGGACc -3' miRNA: 3'- cuUUGCG-GGa----GAGCua---CUAGGCCUGc -5' |
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3125 | 5' | -53.6 | NC_001493.1 | + | 130768 | 0.66 | 0.96322 |
Target: 5'- -uAACGCaCCacgagCUCGuagagGGUCCGGACc -3' miRNA: 3'- cuUUGCG-GGa----GAGCua---CUAGGCCUGc -5' |
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3125 | 5' | -53.6 | NC_001493.1 | + | 72560 | 0.66 | 0.96322 |
Target: 5'- gGGuuCGUUUgCUCGAUGAaaucUCCGGACa -3' miRNA: 3'- -CUuuGCGGGaGAGCUACU----AGGCCUGc -5' |
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3125 | 5' | -53.6 | NC_001493.1 | + | 109257 | 0.66 | 0.959672 |
Target: 5'- ----gGCCCUgaCGAUGuaCCGGGCGc -3' miRNA: 3'- cuuugCGGGAgaGCUACuaGGCCUGC- -5' |
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3125 | 5' | -53.6 | NC_001493.1 | + | 84689 | 0.66 | 0.959672 |
Target: 5'- uGGGCGCCCUCagaUCGgcGAcgCUGGAgGg -3' miRNA: 3'- cUUUGCGGGAG---AGCuaCUa-GGCCUgC- -5' |
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3125 | 5' | -53.6 | NC_001493.1 | + | 57275 | 0.66 | 0.959672 |
Target: 5'- uGAGAacaggaGUCCUCUcacugaggCGAUGAUgcCCGGACa -3' miRNA: 3'- -CUUUg-----CGGGAGA--------GCUACUA--GGCCUGc -5' |
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3125 | 5' | -53.6 | NC_001493.1 | + | 42152 | 0.66 | 0.959305 |
Target: 5'- cGAGugGUcacggugUCUCUCGggGAUC-GGACGg -3' miRNA: 3'- -CUUugCG-------GGAGAGCuaCUAGgCCUGC- -5' |
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3125 | 5' | -53.6 | NC_001493.1 | + | 23362 | 0.66 | 0.955896 |
Target: 5'- --cGCuCCCUCUUGAUGucUUCGGugGc -3' miRNA: 3'- cuuUGcGGGAGAGCUACu-AGGCCugC- -5' |
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3125 | 5' | -53.6 | NC_001493.1 | + | 70690 | 0.67 | 0.938418 |
Target: 5'- cGAcACGCCa--UCGGgugUGAUCaCGGACGg -3' miRNA: 3'- -CUuUGCGGgagAGCU---ACUAG-GCCUGC- -5' |
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3125 | 5' | -53.6 | NC_001493.1 | + | 114781 | 0.67 | 0.938418 |
Target: 5'- --cACGCUCg-UCGAUGAuuUCCuGGACGa -3' miRNA: 3'- cuuUGCGGGagAGCUACU--AGG-CCUGC- -5' |
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3125 | 5' | -53.6 | NC_001493.1 | + | 110498 | 0.67 | 0.938417 |
Target: 5'- --cGCGCCCggagugaaaCUCGAUGGgccgCCGcGACa -3' miRNA: 3'- cuuUGCGGGa--------GAGCUACUa---GGC-CUGc -5' |
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3125 | 5' | -53.6 | NC_001493.1 | + | 64766 | 0.68 | 0.917029 |
Target: 5'- aGGGuCGCCCUCUgGAcGAUCaCGcGGCGc -3' miRNA: 3'- -CUUuGCGGGAGAgCUaCUAG-GC-CUGC- -5' |
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3125 | 5' | -53.6 | NC_001493.1 | + | 29127 | 0.68 | 0.911066 |
Target: 5'- --cGCGUCCUUUU--UGGUCCGGGCc -3' miRNA: 3'- cuuUGCGGGAGAGcuACUAGGCCUGc -5' |
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3125 | 5' | -53.6 | NC_001493.1 | + | 57626 | 0.68 | 0.904858 |
Target: 5'- -cAACGCCCcCUCGAuacUGAaCCGGGUGa -3' miRNA: 3'- cuUUGCGGGaGAGCU---ACUaGGCCUGC- -5' |
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3125 | 5' | -53.6 | NC_001493.1 | + | 90831 | 0.69 | 0.862657 |
Target: 5'- cGAACGgCCUCUCGAcucgGAgCCGG-CGg -3' miRNA: 3'- cUUUGCgGGAGAGCUa---CUaGGCCuGC- -5' |
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3125 | 5' | -53.6 | NC_001493.1 | + | 85946 | 0.72 | 0.715105 |
Target: 5'- gGAGACGCaCCggaucucaacaUCGAUGAgcucCCGGACGg -3' miRNA: 3'- -CUUUGCG-GGag---------AGCUACUa---GGCCUGC- -5' |
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3125 | 5' | -53.6 | NC_001493.1 | + | 83523 | 0.75 | 0.572554 |
Target: 5'- ---cUGCCUgaaCGAUGAUCCGGACGa -3' miRNA: 3'- cuuuGCGGGagaGCUACUAGGCCUGC- -5' |
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3125 | 5' | -53.6 | NC_001493.1 | + | 128612 | 0.75 | 0.552103 |
Target: 5'- cGggGuCGCCCUCUgGGUGAUCgUGGcACGg -3' miRNA: 3'- -CuuU-GCGGGAGAgCUACUAG-GCC-UGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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