Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3126 | 5' | -51.5 | NC_001493.1 | + | 5827 | 1.1 | 0.007184 |
Target: 5'- gGAAACGUCCUCUCGAUGAUCCGGACGa -3' miRNA: 3'- -CUUUGCAGGAGAGCUACUAGGCCUGC- -5' |
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3126 | 5' | -51.5 | NC_001493.1 | + | 5912 | 1.1 | 0.007184 |
Target: 5'- gGAAACGUCCUCUCGAUGAUCCGGACGa -3' miRNA: 3'- -CUUUGCAGGAGAGCUACUAGGCCUGC- -5' |
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3126 | 5' | -51.5 | NC_001493.1 | + | 121381 | 1.1 | 0.007184 |
Target: 5'- gGAAACGUCCUCUCGAUGAUCCGGACGa -3' miRNA: 3'- -CUUUGCAGGAGAGCUACUAGGCCUGC- -5' |
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3126 | 5' | -51.5 | NC_001493.1 | + | 121466 | 1.1 | 0.007184 |
Target: 5'- gGAAACGUCCUCUCGAUGAUCCGGACGa -3' miRNA: 3'- -CUUUGCAGGAGAGCUACUAGGCCUGC- -5' |
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3126 | 5' | -51.5 | NC_001493.1 | + | 121267 | 1.01 | 0.023668 |
Target: 5'- gGAAACGcCCUCUCGAUGAUCCGGACGa -3' miRNA: 3'- -CUUUGCaGGAGAGCUACUAGGCCUGC- -5' |
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3126 | 5' | -51.5 | NC_001493.1 | + | 5713 | 1.01 | 0.023668 |
Target: 5'- gGAAACGcCCUCUCGAUGAUCCGGACGa -3' miRNA: 3'- -CUUUGCaGGAGAGCUACUAGGCCUGC- -5' |
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3126 | 5' | -51.5 | NC_001493.1 | + | 49692 | 0.72 | 0.825161 |
Target: 5'- gGAAAgGUgauaccCCUCUUGGUGGUCCuGACGg -3' miRNA: 3'- -CUUUgCA------GGAGAGCUACUAGGcCUGC- -5' |
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3126 | 5' | -51.5 | NC_001493.1 | + | 29127 | 0.72 | 0.850437 |
Target: 5'- --cGCGUCCUUUU--UGGUCCGGGCc -3' miRNA: 3'- cuuUGCAGGAGAGcuACUAGGCCUGc -5' |
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3126 | 5' | -51.5 | NC_001493.1 | + | 42152 | 0.7 | 0.919664 |
Target: 5'- cGAGugGUCacgguguCUCUCGggGAUC-GGACGg -3' miRNA: 3'- -CUUugCAG-------GAGAGCuaCUAGgCCUGC- -5' |
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3126 | 5' | -51.5 | NC_001493.1 | + | 57275 | 0.7 | 0.920241 |
Target: 5'- uGAGAacaggaGUCCUCUcacugaggCGAUGAUgcCCGGACa -3' miRNA: 3'- -CUUUg-----CAGGAGA--------GCUACUA--GGCCUGc -5' |
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3126 | 5' | -51.5 | NC_001493.1 | + | 72560 | 0.69 | 0.931267 |
Target: 5'- gGGuuCGUUUgCUCGAUGAaaucUCCGGACa -3' miRNA: 3'- -CUuuGCAGGaGAGCUACU----AGGCCUGc -5' |
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3126 | 5' | -51.5 | NC_001493.1 | + | 15616 | 0.69 | 0.941285 |
Target: 5'- gGAGACGUCCUCUaccaacccGUGAUCCacgagcgaugcGGGCa -3' miRNA: 3'- -CUUUGCAGGAGAgc------UACUAGG-----------CCUGc -5' |
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3126 | 5' | -51.5 | NC_001493.1 | + | 131170 | 0.69 | 0.941285 |
Target: 5'- gGAGACGUCCUCUaccaacccGUGAUCCacgagcgaugcGGGCa -3' miRNA: 3'- -CUUUGCAGGAGAgc------UACUAGG-----------CCUGc -5' |
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3126 | 5' | -51.5 | NC_001493.1 | + | 100989 | 0.68 | 0.954449 |
Target: 5'- cGGAGCGUCCcCUCGAUGAcaguagcgCCGuGAa- -3' miRNA: 3'- -CUUUGCAGGaGAGCUACUa-------GGC-CUgc -5' |
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3126 | 5' | -51.5 | NC_001493.1 | + | 114292 | 0.68 | 0.962019 |
Target: 5'- --cGCGUCCUCccaGAUGGUCCcguucaGACGa -3' miRNA: 3'- cuuUGCAGGAGag-CUACUAGGc-----CUGC- -5' |
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3126 | 5' | -51.5 | NC_001493.1 | + | 83523 | 0.68 | 0.962019 |
Target: 5'- ---cUG-CCUgaaCGAUGAUCCGGACGa -3' miRNA: 3'- cuuuGCaGGAga-GCUACUAGGCCUGC- -5' |
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3126 | 5' | -51.5 | NC_001493.1 | + | 90831 | 0.68 | 0.965455 |
Target: 5'- cGAACGgCCUCUCGAcucgGAgCCGG-CGg -3' miRNA: 3'- cUUUGCaGGAGAGCUa---CUaGGCCuGC- -5' |
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3126 | 5' | -51.5 | NC_001493.1 | + | 116861 | 0.68 | 0.965455 |
Target: 5'- gGAAGCGggcaCCg--CGGUGAcUCCGGAUGa -3' miRNA: 3'- -CUUUGCa---GGagaGCUACU-AGGCCUGC- -5' |
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3126 | 5' | -51.5 | NC_001493.1 | + | 44713 | 0.68 | 0.965455 |
Target: 5'- aAAACGUCgUCccggaGAUGAgCCGGAUGg -3' miRNA: 3'- cUUUGCAGgAGag---CUACUaGGCCUGC- -5' |
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3126 | 5' | -51.5 | NC_001493.1 | + | 1307 | 0.68 | 0.965455 |
Target: 5'- gGAAGCGggcaCCg--CGGUGAcUCCGGAUGa -3' miRNA: 3'- -CUUUGCa---GGagaGCUACU-AGGCCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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