miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3126 5' -51.5 NC_001493.1 + 128612 0.66 0.988657
Target:  5'- cGggGuCGcCCUCUgGGUGAUCgUGGcACGg -3'
miRNA:   3'- -CuuU-GCaGGAGAgCUACUAG-GCC-UGC- -5'
3126 5' -51.5 NC_001493.1 + 83523 0.68 0.962019
Target:  5'- ---cUG-CCUgaaCGAUGAUCCGGACGa -3'
miRNA:   3'- cuuuGCaGGAga-GCUACUAGGCCUGC- -5'
3126 5' -51.5 NC_001493.1 + 44713 0.68 0.965455
Target:  5'- aAAACGUCgUCccggaGAUGAgCCGGAUGg -3'
miRNA:   3'- cUUUGCAGgAGag---CUACUaGGCCUGC- -5'
3126 5' -51.5 NC_001493.1 + 90831 0.68 0.965455
Target:  5'- cGAACGgCCUCUCGAcucgGAgCCGG-CGg -3'
miRNA:   3'- cUUUGCaGGAGAGCUa---CUaGGCCuGC- -5'
3126 5' -51.5 NC_001493.1 + 76470 0.67 0.979403
Target:  5'- cGAGAcCGUUCUCuUCGAUGAcaUGGugGa -3'
miRNA:   3'- -CUUU-GCAGGAG-AGCUACUagGCCugC- -5'
3126 5' -51.5 NC_001493.1 + 21699 0.67 0.97963
Target:  5'- --cACGUCCucguggcagaacucUCUCGGUaggaccacgggauccGAUCUGGGCGa -3'
miRNA:   3'- cuuUGCAGG--------------AGAGCUA---------------CUAGGCCUGC- -5'
3126 5' -51.5 NC_001493.1 + 85946 0.66 0.987131
Target:  5'- gGAGACGcaccggaUCUCaacaUCGAUGAgcucCCGGACGg -3'
miRNA:   3'- -CUUUGCa------GGAG----AGCUACUa---GGCCUGC- -5'
3126 5' -51.5 NC_001493.1 + 13057 0.66 0.988657
Target:  5'- cGggGuCGcCCUCUgGGUGAUCgUGGcACGg -3'
miRNA:   3'- -CuuU-GCaGGAGAgCUACUAG-GCC-UGC- -5'
3126 5' -51.5 NC_001493.1 + 66134 0.66 0.988657
Target:  5'- cGAAGCGgggUgaCUCGAUGGgaacaUCCGcGACGg -3'
miRNA:   3'- -CUUUGCa--GgaGAGCUACU-----AGGC-CUGC- -5'
3126 5' -51.5 NC_001493.1 + 100989 0.68 0.954449
Target:  5'- cGGAGCGUCCcCUCGAUGAcaguagcgCCGuGAa- -3'
miRNA:   3'- -CUUUGCAGGaGAGCUACUa-------GGC-CUgc -5'
3126 5' -51.5 NC_001493.1 + 131170 0.69 0.941285
Target:  5'- gGAGACGUCCUCUaccaacccGUGAUCCacgagcgaugcGGGCa -3'
miRNA:   3'- -CUUUGCAGGAGAgc------UACUAGG-----------CCUGc -5'
3126 5' -51.5 NC_001493.1 + 15616 0.69 0.941285
Target:  5'- gGAGACGUCCUCUaccaacccGUGAUCCacgagcgaugcGGGCa -3'
miRNA:   3'- -CUUUGCAGGAGAgc------UACUAGG-----------CCUGc -5'
3126 5' -51.5 NC_001493.1 + 5912 1.1 0.007184
Target:  5'- gGAAACGUCCUCUCGAUGAUCCGGACGa -3'
miRNA:   3'- -CUUUGCAGGAGAGCUACUAGGCCUGC- -5'
3126 5' -51.5 NC_001493.1 + 121381 1.1 0.007184
Target:  5'- gGAAACGUCCUCUCGAUGAUCCGGACGa -3'
miRNA:   3'- -CUUUGCAGGAGAGCUACUAGGCCUGC- -5'
3126 5' -51.5 NC_001493.1 + 121466 1.1 0.007184
Target:  5'- gGAAACGUCCUCUCGAUGAUCCGGACGa -3'
miRNA:   3'- -CUUUGCAGGAGAGCUACUAGGCCUGC- -5'
3126 5' -51.5 NC_001493.1 + 5713 1.01 0.023668
Target:  5'- gGAAACGcCCUCUCGAUGAUCCGGACGa -3'
miRNA:   3'- -CUUUGCaGGAGAGCUACUAGGCCUGC- -5'
3126 5' -51.5 NC_001493.1 + 121267 1.01 0.023668
Target:  5'- gGAAACGcCCUCUCGAUGAUCCGGACGa -3'
miRNA:   3'- -CUUUGCaGGAGAGCUACUAGGCCUGC- -5'
3126 5' -51.5 NC_001493.1 + 29127 0.72 0.850437
Target:  5'- --cGCGUCCUUUU--UGGUCCGGGCc -3'
miRNA:   3'- cuuUGCAGGAGAGcuACUAGGCCUGc -5'
3126 5' -51.5 NC_001493.1 + 42152 0.7 0.919664
Target:  5'- cGAGugGUCacgguguCUCUCGggGAUC-GGACGg -3'
miRNA:   3'- -CUUugCAG-------GAGAGCuaCUAGgCCUGC- -5'
3126 5' -51.5 NC_001493.1 + 57275 0.7 0.920241
Target:  5'- uGAGAacaggaGUCCUCUcacugaggCGAUGAUgcCCGGACa -3'
miRNA:   3'- -CUUUg-----CAGGAGA--------GCUACUA--GGCCUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.