miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31261 5' -56.2 NC_006560.1 + 516 0.77 0.362076
Target:  5'- -cACGGGcgCCgGGgggCGGCGGCCGGCc -3'
miRNA:   3'- gaUGCUCuaGGaCCa--GCCGCUGGCUG- -5'
31261 5' -56.2 NC_006560.1 + 2080 0.7 0.702657
Target:  5'- -gGCGGGGUCCgGGggccCGGCG-UCGGCg -3'
miRNA:   3'- gaUGCUCUAGGaCCa---GCCGCuGGCUG- -5'
31261 5' -56.2 NC_006560.1 + 2695 0.68 0.8152
Target:  5'- -cACGAcGA-CgaGG-CGGCGGCCGGCg -3'
miRNA:   3'- gaUGCU-CUaGgaCCaGCCGCUGGCUG- -5'
31261 5' -56.2 NC_006560.1 + 3933 0.66 0.91075
Target:  5'- -cGCGGGGgcggcgCCgcGGUCGGCGGCgagGGCg -3'
miRNA:   3'- gaUGCUCUa-----GGa-CCAGCCGCUGg--CUG- -5'
31261 5' -56.2 NC_006560.1 + 4031 0.68 0.8152
Target:  5'- -gGCGGcGUCCcGGggCGGCGGCgCGGCg -3'
miRNA:   3'- gaUGCUcUAGGaCCa-GCCGCUG-GCUG- -5'
31261 5' -56.2 NC_006560.1 + 4775 0.7 0.728285
Target:  5'- -cGCGGGGUCCggguccgagucggGGUCGGgGuCCGAg -3'
miRNA:   3'- gaUGCUCUAGGa------------CCAGCCgCuGGCUg -5'
31261 5' -56.2 NC_006560.1 + 4862 0.66 0.898397
Target:  5'- -gGCGAGGUUCgcgucgacGGcggCGGCGgcGCCGGCg -3'
miRNA:   3'- gaUGCUCUAGGa-------CCa--GCCGC--UGGCUG- -5'
31261 5' -56.2 NC_006560.1 + 6293 0.66 0.904688
Target:  5'- uUGCGuaauccaacGAUCCUGcGUUgcuaGGCGACCGGg -3'
miRNA:   3'- gAUGCu--------CUAGGAC-CAG----CCGCUGGCUg -5'
31261 5' -56.2 NC_006560.1 + 9131 0.66 0.898397
Target:  5'- uUGCGAGggCCcgcaGGucuUCGGCGacGCCGAUg -3'
miRNA:   3'- gAUGCUCuaGGa---CC---AGCCGC--UGGCUG- -5'
31261 5' -56.2 NC_006560.1 + 11325 0.68 0.840239
Target:  5'- --cCGAGAUgCUcGG--GGCGACCGGCg -3'
miRNA:   3'- gauGCUCUAgGA-CCagCCGCUGGCUG- -5'
31261 5' -56.2 NC_006560.1 + 15869 0.68 0.832068
Target:  5'- gUACGcGGcggCgUGGgggcCGGCGACCGGCg -3'
miRNA:   3'- gAUGCuCUa--GgACCa---GCCGCUGGCUG- -5'
31261 5' -56.2 NC_006560.1 + 17698 0.72 0.611844
Target:  5'- -gGgGGGGUCgUGGgCGGCGGCCGGa -3'
miRNA:   3'- gaUgCUCUAGgACCaGCCGCUGGCUg -5'
31261 5' -56.2 NC_006560.1 + 18284 0.68 0.840239
Target:  5'- gCUGCGgcagugccGGAUCCUGG-CGGCGgaGCCccugggGACg -3'
miRNA:   3'- -GAUGC--------UCUAGGACCaGCCGC--UGG------CUG- -5'
31261 5' -56.2 NC_006560.1 + 20880 0.67 0.885136
Target:  5'- cCUGCGAGGUUCc-GUCGGCG--CGGCg -3'
miRNA:   3'- -GAUGCUCUAGGacCAGCCGCugGCUG- -5'
31261 5' -56.2 NC_006560.1 + 24650 0.68 0.840239
Target:  5'- --uCGAGuUCCUGGgccugcUGGCGGCCGcCg -3'
miRNA:   3'- gauGCUCuAGGACCa-----GCCGCUGGCuG- -5'
31261 5' -56.2 NC_006560.1 + 28168 0.66 0.916007
Target:  5'- cCUGCGG--UCCUGGggugagUCGGUggucccgGGCCGGCg -3'
miRNA:   3'- -GAUGCUcuAGGACC------AGCCG-------CUGGCUG- -5'
31261 5' -56.2 NC_006560.1 + 32728 0.66 0.91075
Target:  5'- --cCGGGGUCCgucgGGggGGCGGggcCCGGCg -3'
miRNA:   3'- gauGCUCUAGGa---CCagCCGCU---GGCUG- -5'
31261 5' -56.2 NC_006560.1 + 39853 0.67 0.848223
Target:  5'- --cCGAGGucgaccagcaugUCCaGGUCGGCGGCCa-- -3'
miRNA:   3'- gauGCUCU------------AGGaCCAGCCGCUGGcug -5'
31261 5' -56.2 NC_006560.1 + 47855 0.69 0.760942
Target:  5'- -cACGGGGUCC-GG-CGGCgGGCCGGg -3'
miRNA:   3'- gaUGCUCUAGGaCCaGCCG-CUGGCUg -5'
31261 5' -56.2 NC_006560.1 + 48223 0.66 0.922175
Target:  5'- gCU-CGAGGaCCUGGgcuUCGGgGACgGGCc -3'
miRNA:   3'- -GAuGCUCUaGGACC---AGCCgCUGgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.