miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31261 5' -56.2 NC_006560.1 + 48223 0.66 0.922175
Target:  5'- gCU-CGAGGaCCUGGgcuUCGGgGACgGGCc -3'
miRNA:   3'- -GAuGCUCUaGGACC---AGCCgCUGgCUG- -5'
31261 5' -56.2 NC_006560.1 + 131118 0.7 0.692686
Target:  5'- -gGCGGGggCCUGGcCcGCGGCCGGg -3'
miRNA:   3'- gaUGCUCuaGGACCaGcCGCUGGCUg -5'
31261 5' -56.2 NC_006560.1 + 82758 0.7 0.692686
Target:  5'- -gACGAGGacgUCgaGGUCGGgGGCCcGGCg -3'
miRNA:   3'- gaUGCUCU---AGgaCCAGCCgCUGG-CUG- -5'
31261 5' -56.2 NC_006560.1 + 99879 0.7 0.692686
Target:  5'- -cGCgGGGGUCgUGG-CGGCGGCgGGCg -3'
miRNA:   3'- gaUG-CUCUAGgACCaGCCGCUGgCUG- -5'
31261 5' -56.2 NC_006560.1 + 2080 0.7 0.702657
Target:  5'- -gGCGGGGUCCgGGggccCGGCG-UCGGCg -3'
miRNA:   3'- gaUGCUCUAGGaCCa---GCCGCuGGCUG- -5'
31261 5' -56.2 NC_006560.1 + 71486 0.7 0.716515
Target:  5'- -cGCGGGAUCgUGGUCaccggGGCGAggaaccaguucgcccCCGACc -3'
miRNA:   3'- gaUGCUCUAGgACCAG-----CCGCU---------------GGCUG- -5'
31261 5' -56.2 NC_006560.1 + 4775 0.7 0.728285
Target:  5'- -cGCGGGGUCCggguccgagucggGGUCGGgGuCCGAg -3'
miRNA:   3'- gaUGCUCUAGGa------------CCAGCCgCuGGCUg -5'
31261 5' -56.2 NC_006560.1 + 118320 0.7 0.741866
Target:  5'- -gGCGGccgCCgUGG-CGGCGGCCGGCg -3'
miRNA:   3'- gaUGCUcuaGG-ACCaGCCGCUGGCUG- -5'
31261 5' -56.2 NC_006560.1 + 118444 0.69 0.751456
Target:  5'- -gGCGAGGUCCUGGgCGaCGucCUGACg -3'
miRNA:   3'- gaUGCUCUAGGACCaGCcGCu-GGCUG- -5'
31261 5' -56.2 NC_006560.1 + 72653 0.71 0.662511
Target:  5'- -cGCGAGggCCgGGgggCGGCGACCaGCc -3'
miRNA:   3'- gaUGCUCuaGGaCCa--GCCGCUGGcUG- -5'
31261 5' -56.2 NC_006560.1 + 96262 0.71 0.652394
Target:  5'- cCUGCGGGAgaucaaggCCcgGGaCGGCGACgCGACc -3'
miRNA:   3'- -GAUGCUCUa-------GGa-CCaGCCGCUG-GCUG- -5'
31261 5' -56.2 NC_006560.1 + 131520 0.72 0.632119
Target:  5'- gCUGCG-GcUCgaGG-CGGCGGCCGGCg -3'
miRNA:   3'- -GAUGCuCuAGgaCCaGCCGCUGGCUG- -5'
31261 5' -56.2 NC_006560.1 + 110431 0.75 0.420292
Target:  5'- cCUGCGGGG-CCgccgccgcccugUGGguggCGGCGGCCGACa -3'
miRNA:   3'- -GAUGCUCUaGG------------ACCa---GCCGCUGGCUG- -5'
31261 5' -56.2 NC_006560.1 + 88895 0.75 0.465176
Target:  5'- -gGCGAGggCCgGGUCGcCGGCCGGCc -3'
miRNA:   3'- gaUGCUCuaGGaCCAGCcGCUGGCUG- -5'
31261 5' -56.2 NC_006560.1 + 52856 0.74 0.473519
Target:  5'- -gGCGAGAUCCUGGccuauUCGuGCGcgcuguacgacugGCCGACu -3'
miRNA:   3'- gaUGCUCUAGGACC-----AGC-CGC-------------UGGCUG- -5'
31261 5' -56.2 NC_006560.1 + 94792 0.74 0.52212
Target:  5'- -gGCGAGcgCCUGG-CGGCG-CgGACa -3'
miRNA:   3'- gaUGCUCuaGGACCaGCCGCuGgCUG- -5'
31261 5' -56.2 NC_006560.1 + 71848 0.73 0.551598
Target:  5'- -cGCGGGG-CCUGGgccCGGCGGCCG-Cu -3'
miRNA:   3'- gaUGCUCUaGGACCa--GCCGCUGGCuG- -5'
31261 5' -56.2 NC_006560.1 + 135735 0.72 0.601726
Target:  5'- -aACGAGGUCCUGGacugcgUGGUGACgggggCGACg -3'
miRNA:   3'- gaUGCUCUAGGACCa-----GCCGCUG-----GCUG- -5'
31261 5' -56.2 NC_006560.1 + 17698 0.72 0.611844
Target:  5'- -gGgGGGGUCgUGGgCGGCGGCCGGa -3'
miRNA:   3'- gaUgCUCUAGgACCaGCCGCUGGCUg -5'
31261 5' -56.2 NC_006560.1 + 60784 0.72 0.632119
Target:  5'- -gACGaAGA-CCUGG-CGGgGGCCGACc -3'
miRNA:   3'- gaUGC-UCUaGGACCaGCCgCUGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.