miRNA display CGI


Results 1 - 20 of 754 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31262 3' -61.1 NC_006560.1 + 105234 0.66 0.747617
Target:  5'- gCCacGCGG-CUGCCGCUgGGGCuccuCGCu -3'
miRNA:   3'- -GGc-CGCCuGGCGGCGGgUCUGuu--GCG- -5'
31262 3' -61.1 NC_006560.1 + 94635 0.66 0.747617
Target:  5'- gCUGGCGucgggcGACCG-CGCCCAccaaucGACcaugGACGCg -3'
miRNA:   3'- -GGCCGC------CUGGCgGCGGGU------CUG----UUGCG- -5'
31262 3' -61.1 NC_006560.1 + 58307 0.66 0.747617
Target:  5'- gCgGGCGGGCgCGUcgguCGCuUCGGGCGagaGCGCg -3'
miRNA:   3'- -GgCCGCCUG-GCG----GCG-GGUCUGU---UGCG- -5'
31262 3' -61.1 NC_006560.1 + 115853 0.66 0.747617
Target:  5'- gCUGGgGGACgCGCUGgCCCuGGCgcccGugGCc -3'
miRNA:   3'- -GGCCgCCUG-GCGGC-GGGuCUG----UugCG- -5'
31262 3' -61.1 NC_006560.1 + 38639 0.66 0.747617
Target:  5'- -aGGCGGcGCCGCgcgcacagcuCGUCCAGcgGCAgcACGCc -3'
miRNA:   3'- ggCCGCC-UGGCG----------GCGGGUC--UGU--UGCG- -5'
31262 3' -61.1 NC_006560.1 + 11672 0.66 0.747617
Target:  5'- uCCGG-GGGCUcgGCgGUCCGGGCGG-GCg -3'
miRNA:   3'- -GGCCgCCUGG--CGgCGGGUCUGUUgCG- -5'
31262 3' -61.1 NC_006560.1 + 34608 0.66 0.747617
Target:  5'- uCCGGgGGGUgGCCGCgCGGcucgGgGGCGCg -3'
miRNA:   3'- -GGCCgCCUGgCGGCGgGUC----UgUUGCG- -5'
31262 3' -61.1 NC_006560.1 + 25463 0.66 0.747617
Target:  5'- gCCGGCGG-CCGCCGa--GGACug-GUa -3'
miRNA:   3'- -GGCCGCCuGGCGGCgggUCUGuugCG- -5'
31262 3' -61.1 NC_006560.1 + 81427 0.66 0.747617
Target:  5'- aCCcGCGGGCCgggGCgGcCCCGGucGCGGCGUc -3'
miRNA:   3'- -GGcCGCCUGG---CGgC-GGGUC--UGUUGCG- -5'
31262 3' -61.1 NC_006560.1 + 121653 0.66 0.747617
Target:  5'- cCCGGaacgaCGGuCUgguGCCGCCUGGGgGugGCg -3'
miRNA:   3'- -GGCC-----GCCuGG---CGGCGGGUCUgUugCG- -5'
31262 3' -61.1 NC_006560.1 + 116473 0.66 0.747617
Target:  5'- cUCGG-GGGCCGCgacccccgCGCCCcccgaggccaggAGGCggUGCa -3'
miRNA:   3'- -GGCCgCCUGGCG--------GCGGG------------UCUGuuGCG- -5'
31262 3' -61.1 NC_006560.1 + 45419 0.66 0.747617
Target:  5'- gUGGaCGGAgaacgcgcaCUGgCGCCCGGGCAGCcaucGCg -3'
miRNA:   3'- gGCC-GCCU---------GGCgGCGGGUCUGUUG----CG- -5'
31262 3' -61.1 NC_006560.1 + 64944 0.66 0.747617
Target:  5'- aCgGGgGGGCuCGCCGCCgGcGGCcuCGUc -3'
miRNA:   3'- -GgCCgCCUG-GCGGCGGgU-CUGuuGCG- -5'
31262 3' -61.1 NC_006560.1 + 62615 0.66 0.746696
Target:  5'- -aGGCGGggaggguGCCGuCCGCCCucuccguGACGuacaGCGUc -3'
miRNA:   3'- ggCCGCC-------UGGC-GGCGGGu------CUGU----UGCG- -5'
31262 3' -61.1 NC_006560.1 + 86267 0.66 0.744853
Target:  5'- cCCGGCGcgcgcauGGCCGCgGCCUccgGGAagucggcccggaGGCGCu -3'
miRNA:   3'- -GGCCGC-------CUGGCGgCGGG---UCUg-----------UUGCG- -5'
31262 3' -61.1 NC_006560.1 + 53716 0.66 0.738373
Target:  5'- aUGGaCGGGCCgccccacccGCCGCCCc-GCAAcCGCc -3'
miRNA:   3'- gGCC-GCCUGG---------CGGCGGGucUGUU-GCG- -5'
31262 3' -61.1 NC_006560.1 + 121455 0.66 0.738373
Target:  5'- cCCGGCGcGCaCGCCGCgaaCCGca-GGCGCg -3'
miRNA:   3'- -GGCCGCcUG-GCGGCG---GGUcugUUGCG- -5'
31262 3' -61.1 NC_006560.1 + 64276 0.66 0.738373
Target:  5'- cCCGGCGagguccgagcGACaCGCCagguaCCCGG-CGAUGCg -3'
miRNA:   3'- -GGCCGC----------CUG-GCGGc----GGGUCuGUUGCG- -5'
31262 3' -61.1 NC_006560.1 + 78978 0.66 0.738373
Target:  5'- cCCGGCcccGACC-CCGaCCCcGAC-GCGCc -3'
miRNA:   3'- -GGCCGc--CUGGcGGC-GGGuCUGuUGCG- -5'
31262 3' -61.1 NC_006560.1 + 100248 0.66 0.738373
Target:  5'- cUCGGCGGcCuCGCgGCgCAGGaucucGCGCg -3'
miRNA:   3'- -GGCCGCCuG-GCGgCGgGUCUgu---UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.