miRNA display CGI


Results 1 - 20 of 465 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31264 3' -65 NC_006560.1 + 4453 0.66 0.556582
Target:  5'- cGGCGGcCUCGUagcgCCGGCGcGCcuccgccaccucgGGCGCg -3'
miRNA:   3'- uCCGCCuGGGCG----GGCUGCaCG-------------CCGCG- -5'
31264 3' -65 NC_006560.1 + 82594 0.66 0.556582
Target:  5'- cGGcCGcGGCUCGCCCcgaggccccggacGGCGgcuggGCGGCGg -3'
miRNA:   3'- uCC-GC-CUGGGCGGG-------------CUGCa----CGCCGCg -5'
31264 3' -65 NC_006560.1 + 71664 0.66 0.556582
Target:  5'- -cGCGGGCCuCGgCCGGCG-GCGcccccccGCGUa -3'
miRNA:   3'- ucCGCCUGG-GCgGGCUGCaCGC-------CGCG- -5'
31264 3' -65 NC_006560.1 + 137649 0.66 0.554708
Target:  5'- uGGCGGAgcugcuggaggaguCgCCGCUgccguaCGugGUGCuGCGCg -3'
miRNA:   3'- uCCGCCU--------------G-GGCGG------GCugCACGcCGCG- -5'
31264 3' -65 NC_006560.1 + 11122 0.66 0.554708
Target:  5'- gGGGgGGGCUCagcgggcgucgaggGCCCcGgG-GCGGCGCg -3'
miRNA:   3'- -UCCgCCUGGG--------------CGGGcUgCaCGCCGCG- -5'
31264 3' -65 NC_006560.1 + 19766 0.66 0.550965
Target:  5'- cGGCGuccCCCGCCCGcagcaccACGUucucgaugacguuccGCaGGCGCg -3'
miRNA:   3'- uCCGCcu-GGGCGGGC-------UGCA---------------CG-CCGCG- -5'
31264 3' -65 NC_006560.1 + 63305 0.66 0.548163
Target:  5'- cAGGCGGuCgUGucCCCGGCGgcacUGgGGCGUg -3'
miRNA:   3'- -UCCGCCuGgGC--GGGCUGC----ACgCCGCG- -5'
31264 3' -65 NC_006560.1 + 126834 0.66 0.548163
Target:  5'- uGGCcacGGACaCGgCCGcCGUgGCGGUGCa -3'
miRNA:   3'- uCCG---CCUGgGCgGGCuGCA-CGCCGCG- -5'
31264 3' -65 NC_006560.1 + 26847 0.66 0.548163
Target:  5'- gGGGCGcGGCCgGCcgccgccccCCGGCGcccGUGGCGg -3'
miRNA:   3'- -UCCGC-CUGGgCG---------GGCUGCa--CGCCGCg -5'
31264 3' -65 NC_006560.1 + 135324 0.66 0.548163
Target:  5'- gGGGUGGGCCUGCacccagCCGuCGUcgGCcGGcCGCg -3'
miRNA:   3'- -UCCGCCUGGGCG------GGCuGCA--CG-CC-GCG- -5'
31264 3' -65 NC_006560.1 + 146345 0.66 0.548163
Target:  5'- cGGCc--CCCGCUCGGCGggGCGGgGg -3'
miRNA:   3'- uCCGccuGGGCGGGCUGCa-CGCCgCg -5'
31264 3' -65 NC_006560.1 + 124122 0.66 0.548163
Target:  5'- -cGCGGggcACCCa--CGGCGUcGCGGCGCc -3'
miRNA:   3'- ucCGCC---UGGGcggGCUGCA-CGCCGCG- -5'
31264 3' -65 NC_006560.1 + 125548 0.66 0.548163
Target:  5'- gGGGCGuccauCCUGCCCGACcagGCcGUGCc -3'
miRNA:   3'- -UCCGCcu---GGGCGGGCUGca-CGcCGCG- -5'
31264 3' -65 NC_006560.1 + 12589 0.66 0.548163
Target:  5'- cAGGCGcACgUGCuuGGCGgccgcGCGGcCGCg -3'
miRNA:   3'- -UCCGCcUGgGCGggCUGCa----CGCC-GCG- -5'
31264 3' -65 NC_006560.1 + 89546 0.66 0.548163
Target:  5'- -cGCGcGCCCGgCCGGC-UGCacGGCGCc -3'
miRNA:   3'- ucCGCcUGGGCgGGCUGcACG--CCGCG- -5'
31264 3' -65 NC_006560.1 + 123432 0.66 0.548163
Target:  5'- -cGCGGGCCgGCCCcugggccacGAC-UGCGGCc- -3'
miRNA:   3'- ucCGCCUGGgCGGG---------CUGcACGCCGcg -5'
31264 3' -65 NC_006560.1 + 9173 0.66 0.548163
Target:  5'- cGGGCgccucGGGCCCGCgaCgGGCGUcagcGCcGGUGCg -3'
miRNA:   3'- -UCCG-----CCUGGGCG--GgCUGCA----CG-CCGCG- -5'
31264 3' -65 NC_006560.1 + 15010 0.66 0.548163
Target:  5'- cGGuCGcauCCuCGCCCGcgGgGUGCGGCGUc -3'
miRNA:   3'- uCC-GCcu-GG-GCGGGC--UgCACGCCGCG- -5'
31264 3' -65 NC_006560.1 + 27469 0.66 0.548163
Target:  5'- gAGcGCGGGCaaccagcaCGCCCGGCa-GCGuccGCGCg -3'
miRNA:   3'- -UC-CGCCUGg-------GCGGGCUGcaCGC---CGCG- -5'
31264 3' -65 NC_006560.1 + 137193 0.66 0.548163
Target:  5'- aGGGCGcGGCCC-CgCCGGCGgccggggaGCgGGCGUu -3'
miRNA:   3'- -UCCGC-CUGGGcG-GGCUGCa-------CG-CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.