miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31265 5' -53.2 NC_006560.1 + 72890 0.66 0.971863
Target:  5'- cGCCA-CCCGGaaggCGCUGgAcgCGCUg- -3'
miRNA:   3'- -CGGUaGGGCCg---GCGAUaUuaGCGAac -5'
31265 5' -53.2 NC_006560.1 + 55169 0.66 0.971863
Target:  5'- cGCCGUcgCCCGGCCGaCgcccggCGCg-- -3'
miRNA:   3'- -CGGUA--GGGCCGGC-GauauuaGCGaac -5'
31265 5' -53.2 NC_006560.1 + 81011 0.66 0.971863
Target:  5'- cGCCcccgCCUGGCCGCggagGaAGUUGCg-- -3'
miRNA:   3'- -CGGua--GGGCCGGCGa---UaUUAGCGaac -5'
31265 5' -53.2 NC_006560.1 + 106353 0.66 0.971576
Target:  5'- aGCCgggcucggacuuuGUCCgCGcGCCGCUGUGGgccgCGCg-- -3'
miRNA:   3'- -CGG-------------UAGG-GC-CGGCGAUAUUa---GCGaac -5'
31265 5' -53.2 NC_006560.1 + 131619 0.66 0.971287
Target:  5'- cGCCggCCCGGCgGCggucgagCGCg-- -3'
miRNA:   3'- -CGGuaGGGCCGgCGauauua-GCGaac -5'
31265 5' -53.2 NC_006560.1 + 23629 0.66 0.971287
Target:  5'- cGCCGcgCCCGcGCCGCgcccgcgCGCcUGg -3'
miRNA:   3'- -CGGUa-GGGC-CGGCGauauua-GCGaAC- -5'
31265 5' -53.2 NC_006560.1 + 118547 0.66 0.97011
Target:  5'- aCCGcCCCGGCUGgCUGUGGagccggcgcucggucUCGCUg- -3'
miRNA:   3'- cGGUaGGGCCGGC-GAUAUU---------------AGCGAac -5'
31265 5' -53.2 NC_006560.1 + 85121 0.66 0.965719
Target:  5'- -aCGUCCCGGCCGUgucggcCGCc-- -3'
miRNA:   3'- cgGUAGGGCCGGCGauauuaGCGaac -5'
31265 5' -53.2 NC_006560.1 + 65271 0.66 0.965719
Target:  5'- cGCCGUCaCCGucaccCCGCUGgcccGGUCGCa-- -3'
miRNA:   3'- -CGGUAG-GGCc----GGCGAUa---UUAGCGaac -5'
31265 5' -53.2 NC_006560.1 + 46735 0.66 0.965719
Target:  5'- cGCCGggCCCGGUCGCcu---UCGCc-- -3'
miRNA:   3'- -CGGUa-GGGCCGGCGauauuAGCGaac -5'
31265 5' -53.2 NC_006560.1 + 37689 0.66 0.965719
Target:  5'- cGCCGggcgCCgGGCCGCUcuugAUGGUccccgCGCUg- -3'
miRNA:   3'- -CGGUa---GGgCCGGCGA----UAUUA-----GCGAac -5'
31265 5' -53.2 NC_006560.1 + 119512 0.66 0.963705
Target:  5'- uGCC-UCCgGGCCGCggggccgcgCGCUa- -3'
miRNA:   3'- -CGGuAGGgCCGGCGauauua---GCGAac -5'
31265 5' -53.2 NC_006560.1 + 116551 0.66 0.962317
Target:  5'- gGCCgaGUCCUGGCUGCU---GUUGCc-- -3'
miRNA:   3'- -CGG--UAGGGCCGGCGAuauUAGCGaac -5'
31265 5' -53.2 NC_006560.1 + 56122 0.66 0.962317
Target:  5'- cGCCcgCCCGGUCGggGg---CGCUg- -3'
miRNA:   3'- -CGGuaGGGCCGGCgaUauuaGCGAac -5'
31265 5' -53.2 NC_006560.1 + 132034 0.66 0.962317
Target:  5'- cGCC--CCCGGCCGCcg----CGCUg- -3'
miRNA:   3'- -CGGuaGGGCCGGCGauauuaGCGAac -5'
31265 5' -53.2 NC_006560.1 + 68158 0.66 0.958688
Target:  5'- gGCCAUCgCGGCCuuccuGCUGUccggCGCg-- -3'
miRNA:   3'- -CGGUAGgGCCGG-----CGAUAuua-GCGaac -5'
31265 5' -53.2 NC_006560.1 + 142305 0.67 0.954825
Target:  5'- gGCCggCgCCGGCCGCUGga---GCUc- -3'
miRNA:   3'- -CGGuaG-GGCCGGCGAUauuagCGAac -5'
31265 5' -53.2 NC_006560.1 + 15236 0.67 0.954825
Target:  5'- cCCAUCCgCGGCCGgUGcGGUCGg--- -3'
miRNA:   3'- cGGUAGG-GCCGGCgAUaUUAGCgaac -5'
31265 5' -53.2 NC_006560.1 + 143050 0.67 0.950725
Target:  5'- aCCcgCCCGGCCGCcg----CGCg-- -3'
miRNA:   3'- cGGuaGGGCCGGCGauauuaGCGaac -5'
31265 5' -53.2 NC_006560.1 + 131181 0.67 0.950725
Target:  5'- cGCCGcgggggcgCCCGGCCGcCUGUccccggCGCUg- -3'
miRNA:   3'- -CGGUa-------GGGCCGGC-GAUAuua---GCGAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.