miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31266 5' -54.8 NC_006560.1 + 53478 0.66 0.950029
Target:  5'- cGAGGCcgcgGCgGCGCGcGAGGaCGACGAc -3'
miRNA:   3'- -CUCCGca--UGaUGUGC-CUCUcGCUGCU- -5'
31266 5' -54.8 NC_006560.1 + 2378 0.66 0.950029
Target:  5'- -cGGCgGUACUcGCGCGGcGGcAGCGGCa- -3'
miRNA:   3'- cuCCG-CAUGA-UGUGCC-UC-UCGCUGcu -5'
31266 5' -54.8 NC_006560.1 + 99365 0.66 0.950029
Target:  5'- uGGGCGUACUgGgGCGGGG-GCGcccGCGc -3'
miRNA:   3'- cUCCGCAUGA-UgUGCCUCuCGC---UGCu -5'
31266 5' -54.8 NC_006560.1 + 51946 0.66 0.950029
Target:  5'- gGAGGCGgccgcGCUccgggcGCACGuGuccGGGCGGCGGg -3'
miRNA:   3'- -CUCCGCa----UGA------UGUGC-Cu--CUCGCUGCU- -5'
31266 5' -54.8 NC_006560.1 + 67074 0.66 0.950029
Target:  5'- aGGGCGggGCUGCccGCGGcgccagAGAGCG-CGGg -3'
miRNA:   3'- cUCCGCa-UGAUG--UGCC------UCUCGCuGCU- -5'
31266 5' -54.8 NC_006560.1 + 33407 0.66 0.950029
Target:  5'- gGGGGCGc---GgGCGGGGAGCGcCGGc -3'
miRNA:   3'- -CUCCGCaugaUgUGCCUCUCGCuGCU- -5'
31266 5' -54.8 NC_006560.1 + 13469 0.66 0.950029
Target:  5'- -cGGCGUAgUACACG----GCGACGGg -3'
miRNA:   3'- cuCCGCAUgAUGUGCcucuCGCUGCU- -5'
31266 5' -54.8 NC_006560.1 + 52534 0.66 0.950029
Target:  5'- gGAGGCGg---GgGCGucGAGCGGCGGc -3'
miRNA:   3'- -CUCCGCaugaUgUGCcuCUCGCUGCU- -5'
31266 5' -54.8 NC_006560.1 + 98446 0.66 0.945725
Target:  5'- cGGGCGgcgGCgaggacgGCGCGGAGGacuuUGACGAg -3'
miRNA:   3'- cUCCGCa--UGa------UGUGCCUCUc---GCUGCU- -5'
31266 5' -54.8 NC_006560.1 + 9864 0.66 0.945725
Target:  5'- -cGGCGUcCgugggGCACcgGGGGGGCGGCa- -3'
miRNA:   3'- cuCCGCAuGa----UGUG--CCUCUCGCUGcu -5'
31266 5' -54.8 NC_006560.1 + 108798 0.66 0.945725
Target:  5'- aAGGCGUACgg---GGAGGGCguguaGACGAa -3'
miRNA:   3'- cUCCGCAUGaugugCCUCUCG-----CUGCU- -5'
31266 5' -54.8 NC_006560.1 + 114842 0.66 0.945725
Target:  5'- gGGGGCuggcGCUguaGCGGGGAGgGGCGGa -3'
miRNA:   3'- -CUCCGca--UGAug-UGCCUCUCgCUGCU- -5'
31266 5' -54.8 NC_006560.1 + 118362 0.66 0.945282
Target:  5'- cGGGGCgGUGCUcGCGggccuggagccccCGGGGGGCgGGCGGu -3'
miRNA:   3'- -CUCCG-CAUGA-UGU-------------GCCUCUCG-CUGCU- -5'
31266 5' -54.8 NC_006560.1 + 76124 0.66 0.941184
Target:  5'- --cGCGUGCgucgggGCGCuGGAGcGCGugGAc -3'
miRNA:   3'- cucCGCAUGa-----UGUG-CCUCuCGCugCU- -5'
31266 5' -54.8 NC_006560.1 + 33457 0.66 0.941184
Target:  5'- cGGGCGgGCccggGCAggaGGAGAgGCGGCGGg -3'
miRNA:   3'- cUCCGCaUGa---UGUg--CCUCU-CGCUGCU- -5'
31266 5' -54.8 NC_006560.1 + 83527 0.66 0.936405
Target:  5'- cGGGCGcGCgccCGCGGAGA-CGugGGg -3'
miRNA:   3'- cUCCGCaUGau-GUGCCUCUcGCugCU- -5'
31266 5' -54.8 NC_006560.1 + 81222 0.66 0.936405
Target:  5'- gGAGGaggACgGCgGCGGAGGGgGGCGAg -3'
miRNA:   3'- -CUCCgcaUGaUG-UGCCUCUCgCUGCU- -5'
31266 5' -54.8 NC_006560.1 + 139836 0.66 0.936405
Target:  5'- uGGGCGUGCgAgGCGGGcucuccGCGGCGGa -3'
miRNA:   3'- cUCCGCAUGaUgUGCCUcu----CGCUGCU- -5'
31266 5' -54.8 NC_006560.1 + 131837 0.66 0.936405
Target:  5'- --cGCGUACgcCGCGGcGGcGGCGGCGAc -3'
miRNA:   3'- cucCGCAUGauGUGCC-UC-UCGCUGCU- -5'
31266 5' -54.8 NC_006560.1 + 133522 0.66 0.936405
Target:  5'- cGGGGuCGgcgGCUucguGgGCGGGGAGcCGGCGGc -3'
miRNA:   3'- -CUCC-GCa--UGA----UgUGCCUCUC-GCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.