miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31267 3' -55.8 NC_006560.1 + 99337 0.66 0.907916
Target:  5'- gACGGCcGCcgCCUccCAcugCGCCGGCugGg -3'
miRNA:   3'- -UGUCGuCGa-GGAa-GUa--GUGGCCGugC- -5'
31267 3' -55.8 NC_006560.1 + 149342 0.66 0.907916
Target:  5'- gGCGGCGGCUCC-UCccCGCC-GCGgGg -3'
miRNA:   3'- -UGUCGUCGAGGaAGuaGUGGcCGUgC- -5'
31267 3' -55.8 NC_006560.1 + 15872 0.66 0.907916
Target:  5'- cGCGGCGGCgugggggCCggCG--ACCGGCGCc -3'
miRNA:   3'- -UGUCGUCGa------GGaaGUagUGGCCGUGc -5'
31267 3' -55.8 NC_006560.1 + 51527 0.66 0.907916
Target:  5'- gGCGGCGcgcgcGCUCCUg----GCCGGCGCc -3'
miRNA:   3'- -UGUCGU-----CGAGGAaguagUGGCCGUGc -5'
31267 3' -55.8 NC_006560.1 + 15296 0.66 0.907298
Target:  5'- cGCGGCGGCgguggCCUcgggcgcccccUCcgCGCCGGUcccguucGCGg -3'
miRNA:   3'- -UGUCGUCGa----GGA-----------AGuaGUGGCCG-------UGC- -5'
31267 3' -55.8 NC_006560.1 + 149446 0.66 0.901624
Target:  5'- cACAGCgAGCUCCggagauccCAUCGCaggCGGCagACGg -3'
miRNA:   3'- -UGUCG-UCGAGGaa------GUAGUG---GCCG--UGC- -5'
31267 3' -55.8 NC_006560.1 + 111024 0.66 0.901624
Target:  5'- uGCAcCAGC-CCcUCAUCGCCcGGgACGg -3'
miRNA:   3'- -UGUcGUCGaGGaAGUAGUGG-CCgUGC- -5'
31267 3' -55.8 NC_006560.1 + 48838 0.66 0.901624
Target:  5'- cCAGCcGCUCCUguUCGU-GCaCGGCGCc -3'
miRNA:   3'- uGUCGuCGAGGA--AGUAgUG-GCCGUGc -5'
31267 3' -55.8 NC_006560.1 + 34742 0.66 0.895095
Target:  5'- cGCGGCGGC-CCgcgCGUCGCCu-CGCGa -3'
miRNA:   3'- -UGUCGUCGaGGaa-GUAGUGGccGUGC- -5'
31267 3' -55.8 NC_006560.1 + 56214 0.66 0.895095
Target:  5'- -aGGCGGUcgUCUUCGcCGCCGGC-CGg -3'
miRNA:   3'- ugUCGUCGa-GGAAGUaGUGGCCGuGC- -5'
31267 3' -55.8 NC_006560.1 + 21734 0.66 0.895095
Target:  5'- cCGGCcgGGCgCCgccCGUCGCCGGC-CGg -3'
miRNA:   3'- uGUCG--UCGaGGaa-GUAGUGGCCGuGC- -5'
31267 3' -55.8 NC_006560.1 + 32146 0.66 0.888331
Target:  5'- cACGGCcgGGCggggCCgggCGUCcCCGGCGCc -3'
miRNA:   3'- -UGUCG--UCGa---GGaa-GUAGuGGCCGUGc -5'
31267 3' -55.8 NC_006560.1 + 51984 0.66 0.881337
Target:  5'- -gGGCGGCgggCCU-----GCCGGCGCGg -3'
miRNA:   3'- ugUCGUCGa--GGAaguagUGGCCGUGC- -5'
31267 3' -55.8 NC_006560.1 + 70051 0.66 0.881337
Target:  5'- aGCAGCuGCUCCgcgagcugCA-CGCCGucguGCGCGg -3'
miRNA:   3'- -UGUCGuCGAGGaa------GUaGUGGC----CGUGC- -5'
31267 3' -55.8 NC_006560.1 + 7925 0.66 0.881337
Target:  5'- gACGGCGGCcgugaaCUUCGUggcggCGCUGGCGCc -3'
miRNA:   3'- -UGUCGUCGag----GAAGUA-----GUGGCCGUGc -5'
31267 3' -55.8 NC_006560.1 + 140130 0.67 0.874117
Target:  5'- gGCGGCAGCaCCUccUCcgCGC-GGCACc -3'
miRNA:   3'- -UGUCGUCGaGGA--AGuaGUGgCCGUGc -5'
31267 3' -55.8 NC_006560.1 + 43256 0.67 0.871907
Target:  5'- gGCAGCcgcGGUcgugcgcgaugaacUCCUUCAgggCGCCGGUcucGCGg -3'
miRNA:   3'- -UGUCG---UCG--------------AGGAAGUa--GUGGCCG---UGC- -5'
31267 3' -55.8 NC_006560.1 + 52550 0.67 0.866675
Target:  5'- aGCGGCGGCcucugCCgcgcCAUC-CUGGCGCa -3'
miRNA:   3'- -UGUCGUCGa----GGaa--GUAGuGGCCGUGc -5'
31267 3' -55.8 NC_006560.1 + 23757 0.67 0.866675
Target:  5'- uGCGcGCcGUgggCC-UCGUCGCCGGCGCc -3'
miRNA:   3'- -UGU-CGuCGa--GGaAGUAGUGGCCGUGc -5'
31267 3' -55.8 NC_006560.1 + 15718 0.67 0.843085
Target:  5'- -gGGCGGCgggCCggcaCGggGCCGGCACGc -3'
miRNA:   3'- ugUCGUCGa--GGaa--GUagUGGCCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.