miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3127 5' -52.2 NC_001493.1 + 74227 0.66 0.975887
Target:  5'- --cGCCAUGAaguucAGGUUugUCACGAGGa-- -3'
miRNA:   3'- ggaUGGUACU-----UCCGG--AGUGCUCCaau -5'
3127 5' -52.2 NC_001493.1 + 60080 0.66 0.967138
Target:  5'- aCCggugACCGUGAcGGgUUgGCGAGGUc- -3'
miRNA:   3'- -GGa---UGGUACUuCCgGAgUGCUCCAau -5'
3127 5' -52.2 NC_001493.1 + 37432 0.68 0.933463
Target:  5'- cCCU-CgAUGu-GGCCUCaACGAGGUg- -3'
miRNA:   3'- -GGAuGgUACuuCCGGAG-UGCUCCAau -5'
3127 5' -52.2 NC_001493.1 + 36215 0.68 0.922518
Target:  5'- -gUACCggGgcGGCCUgCGCGGGGg-- -3'
miRNA:   3'- ggAUGGuaCuuCCGGA-GUGCUCCaau -5'
3127 5' -52.2 NC_001493.1 + 14334 0.68 0.916658
Target:  5'- gCU-CguUGAGGGCCagggUCACGAGGUc- -3'
miRNA:   3'- gGAuGguACUUCCGG----AGUGCUCCAau -5'
3127 5' -52.2 NC_001493.1 + 129888 0.68 0.916658
Target:  5'- gCU-CguUGAGGGCCagggUCACGAGGUc- -3'
miRNA:   3'- gGAuGguACUUCCGG----AGUGCUCCAau -5'
3127 5' -52.2 NC_001493.1 + 55734 0.7 0.844449
Target:  5'- -aUGCCAUGAAGGCCacCAUaGAGGa-- -3'
miRNA:   3'- ggAUGGUACUUCCGGa-GUG-CUCCaau -5'
3127 5' -52.2 NC_001493.1 + 93219 0.73 0.690097
Target:  5'- gCUGCgAUGAAGGCCUCuACGAaGUa- -3'
miRNA:   3'- gGAUGgUACUUCCGGAG-UGCUcCAau -5'
3127 5' -52.2 NC_001493.1 + 122200 1.09 0.005546
Target:  5'- gCCUACCAUGAAGGCCUCACGAGGUUAu -3'
miRNA:   3'- -GGAUGGUACUUCCGGAGUGCUCCAAU- -5'
3127 5' -52.2 NC_001493.1 + 122082 1.09 0.005546
Target:  5'- gCCUACCAUGAAGGCCUCACGAGGUUAu -3'
miRNA:   3'- -GGAUGGUACUUCCGGAGUGCUCCAAU- -5'
3127 5' -52.2 NC_001493.1 + 6646 1.09 0.005546
Target:  5'- gCCUACCAUGAAGGCCUCACGAGGUUAu -3'
miRNA:   3'- -GGAUGGUACUUCCGGAGUGCUCCAAU- -5'
3127 5' -52.2 NC_001493.1 + 6528 1.09 0.005546
Target:  5'- gCCUACCAUGAAGGCCUCACGAGGUUAu -3'
miRNA:   3'- -GGAUGGUACUUCCGGAGUGCUCCAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.