Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3128 | 3' | -66 | NC_001493.1 | + | 3830 | 0.67 | 0.385071 |
Target: 5'- cCCCCUUCCGUUCGGgauCCCCGuuGa -3' miRNA: 3'- aGGGGAGGGCGGGCCaccGGGGCuuU- -5' |
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3128 | 3' | -66 | NC_001493.1 | + | 5384 | 0.68 | 0.339655 |
Target: 5'- gCUCCUCCCGCCCaaguccGG-GaGCCCCa--- -3' miRNA: 3'- aGGGGAGGGCGGG------CCaC-CGGGGcuuu -5' |
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3128 | 3' | -66 | NC_001493.1 | + | 5480 | 0.66 | 0.442887 |
Target: 5'- cUCCCugguCUCCUcCCCGGUgaacccGGCUCCGAu- -3' miRNA: 3'- -AGGG----GAGGGcGGGCCA------CCGGGGCUuu -5' |
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3128 | 3' | -66 | NC_001493.1 | + | 7683 | 0.67 | 0.361868 |
Target: 5'- -aCCCUCCC-CCCGG-GGaaCCCGAu- -3' miRNA: 3'- agGGGAGGGcGGGCCaCCg-GGGCUuu -5' |
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3128 | 3' | -66 | NC_001493.1 | + | 7864 | 1.05 | 0.000578 |
Target: 5'- aUCCCCUCCCGCCCGGUGGCCCCGAAAc -3' miRNA: 3'- -AGGGGAGGGCGGGCCACCGGGGCUUU- -5' |
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3128 | 3' | -66 | NC_001493.1 | + | 13547 | 0.66 | 0.393022 |
Target: 5'- cCCCCUuacCCCGgaCCgCGGUGGagaggCCCGAGAc -3' miRNA: 3'- aGGGGA---GGGC--GG-GCCACCg----GGGCUUU- -5' |
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3128 | 3' | -66 | NC_001493.1 | + | 15055 | 0.66 | 0.425865 |
Target: 5'- aCCgCUCCC-UCCGG-GGCCCCu--- -3' miRNA: 3'- aGGgGAGGGcGGGCCaCCGGGGcuuu -5' |
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3128 | 3' | -66 | NC_001493.1 | + | 17597 | 0.66 | 0.401077 |
Target: 5'- aUCCCgggCaCGCCCGcGUugcGGCCCCGAc- -3' miRNA: 3'- aGGGGa--GgGCGGGC-CA---CCGGGGCUuu -5' |
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3128 | 3' | -66 | NC_001493.1 | + | 18207 | 0.66 | 0.401077 |
Target: 5'- cCCCCgaCCGCCCGGgcguGCCCaUGGAGg -3' miRNA: 3'- aGGGGagGGCGGGCCac--CGGG-GCUUU- -5' |
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3128 | 3' | -66 | NC_001493.1 | + | 18567 | 0.66 | 0.442887 |
Target: 5'- uUCCUCagggCUCGCCCcGUGGCCgUGGAc -3' miRNA: 3'- -AGGGGa---GGGCGGGcCACCGGgGCUUu -5' |
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3128 | 3' | -66 | NC_001493.1 | + | 19013 | 0.66 | 0.425865 |
Target: 5'- cCCaCCUCCCGCgCCGcgaGCCCgGGAAa -3' miRNA: 3'- aGG-GGAGGGCG-GGCcacCGGGgCUUU- -5' |
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3128 | 3' | -66 | NC_001493.1 | + | 21198 | 0.67 | 0.377228 |
Target: 5'- aUCCUCUCUCGUgUG--GGCCCCGAGu -3' miRNA: 3'- -AGGGGAGGGCGgGCcaCCGGGGCUUu -5' |
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3128 | 3' | -66 | NC_001493.1 | + | 23364 | 0.66 | 0.409238 |
Target: 5'- cUCCCUCuuGaugucuUCGGUGGCCUCGGc- -3' miRNA: 3'- aGGGGAGggCg-----GGCCACCGGGGCUuu -5' |
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3128 | 3' | -66 | NC_001493.1 | + | 30334 | 0.68 | 0.339655 |
Target: 5'- aCCCgaUCCC-CCCGaccagGGCCCCGAGu -3' miRNA: 3'- aGGGg-AGGGcGGGCca---CCGGGGCUUu -5' |
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3128 | 3' | -66 | NC_001493.1 | + | 37350 | 0.66 | 0.417501 |
Target: 5'- uUCaCCCgcgacaCCGUCuCGGaUGGCCUCGAGAa -3' miRNA: 3'- -AG-GGGag----GGCGG-GCC-ACCGGGGCUUU- -5' |
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3128 | 3' | -66 | NC_001493.1 | + | 44304 | 0.71 | 0.202337 |
Target: 5'- aCCaUCUCCgGCCCGagcaGGCCCCGGAAc -3' miRNA: 3'- aGG-GGAGGgCGGGCca--CCGGGGCUUU- -5' |
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3128 | 3' | -66 | NC_001493.1 | + | 51363 | 0.66 | 0.409238 |
Target: 5'- cCCCCUCCCGUggCGGUccaGGUCCCc--- -3' miRNA: 3'- aGGGGAGGGCGg-GCCA---CCGGGGcuuu -5' |
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3128 | 3' | -66 | NC_001493.1 | + | 66375 | 0.67 | 0.385071 |
Target: 5'- -aCCCUCgcccaCCGuCCCGGUGGUgaggCCCGGu- -3' miRNA: 3'- agGGGAG-----GGC-GGGCCACCG----GGGCUuu -5' |
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3128 | 3' | -66 | NC_001493.1 | + | 75874 | 0.66 | 0.442887 |
Target: 5'- cCCCCUCUC-CUCGGgaUGGUCUCGGGu -3' miRNA: 3'- aGGGGAGGGcGGGCC--ACCGGGGCUUu -5' |
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3128 | 3' | -66 | NC_001493.1 | + | 80908 | 0.69 | 0.278439 |
Target: 5'- uUCCaUCUCCCGCCgcgcggcaucauCGGUGGCCCacuuauuCGggGg -3' miRNA: 3'- -AGG-GGAGGGCGG------------GCCACCGGG-------GCuuU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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