miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3128 3' -66 NC_001493.1 + 7864 1.05 0.000578
Target:  5'- aUCCCCUCCCGCCCGGUGGCCCCGAAAc -3'
miRNA:   3'- -AGGGGAGGGCGGGCCACCGGGGCUUU- -5'
3128 3' -66 NC_001493.1 + 87537 0.66 0.401077
Target:  5'- aCCCCUgaC-CCCGGUGGUgCCGGu- -3'
miRNA:   3'- aGGGGAggGcGGGCCACCGgGGCUuu -5'
3128 3' -66 NC_001493.1 + 17597 0.66 0.401077
Target:  5'- aUCCCgggCaCGCCCGcGUugcGGCCCCGAc- -3'
miRNA:   3'- aGGGGa--GgGCGGGC-CA---CCGGGGCUuu -5'
3128 3' -66 NC_001493.1 + 133151 0.66 0.401077
Target:  5'- aUCCCgggCaCGCCCGcGUugcGGCCCCGAc- -3'
miRNA:   3'- aGGGGa--GgGCGGGC-CA---CCGGGGCUuu -5'
3128 3' -66 NC_001493.1 + 23364 0.66 0.409238
Target:  5'- cUCCCUCuuGaugucuUCGGUGGCCUCGGc- -3'
miRNA:   3'- aGGGGAGggCg-----GGCCACCGGGGCUuu -5'
3128 3' -66 NC_001493.1 + 51363 0.66 0.409238
Target:  5'- cCCCCUCCCGUggCGGUccaGGUCCCc--- -3'
miRNA:   3'- aGGGGAGGGCGg-GCCA---CCGGGGcuuu -5'
3128 3' -66 NC_001493.1 + 19013 0.66 0.425865
Target:  5'- cCCaCCUCCCGCgCCGcgaGCCCgGGAAa -3'
miRNA:   3'- aGG-GGAGGGCG-GGCcacCGGGgCUUU- -5'
3128 3' -66 NC_001493.1 + 5480 0.66 0.442887
Target:  5'- cUCCCugguCUCCUcCCCGGUgaacccGGCUCCGAu- -3'
miRNA:   3'- -AGGG----GAGGGcGGGCCA------CCGGGGCUuu -5'
3128 3' -66 NC_001493.1 + 121034 0.66 0.442887
Target:  5'- cUCCCugguCUCCUcCCCGGUgaacccGGCUCCGAu- -3'
miRNA:   3'- -AGGG----GAGGGcGGGCCA------CCGGGGCUuu -5'
3128 3' -66 NC_001493.1 + 129101 0.66 0.393022
Target:  5'- cCCCCUuacCCCGgaCCgCGGUGGagaggCCCGAGAc -3'
miRNA:   3'- aGGGGA---GGGC--GG-GCCACCg----GGGCUUU- -5'
3128 3' -66 NC_001493.1 + 13547 0.66 0.393022
Target:  5'- cCCCCUuacCCCGgaCCgCGGUGGagaggCCCGAGAc -3'
miRNA:   3'- aGGGGA---GGGC--GG-GCCACCg----GGGCUUU- -5'
3128 3' -66 NC_001493.1 + 66375 0.67 0.385071
Target:  5'- -aCCCUCgcccaCCGuCCCGGUGGUgaggCCCGGu- -3'
miRNA:   3'- agGGGAG-----GGC-GGGCCACCG----GGGCUuu -5'
3128 3' -66 NC_001493.1 + 123418 1.05 0.000578
Target:  5'- aUCCCCUCCCGCCCGGUGGCCCCGAAAc -3'
miRNA:   3'- -AGGGGAGGGCGGGCCACCGGGGCUUU- -5'
3128 3' -66 NC_001493.1 + 44304 0.71 0.202337
Target:  5'- aCCaUCUCCgGCCCGagcaGGCCCCGGAAc -3'
miRNA:   3'- aGG-GGAGGgCGGGCca--CCGGGGCUUU- -5'
3128 3' -66 NC_001493.1 + 90463 0.71 0.217067
Target:  5'- aCCCCgagcgCaCCGUCCauGGUGGCCCgGAGGu -3'
miRNA:   3'- aGGGGa----G-GGCGGG--CCACCGGGgCUUU- -5'
3128 3' -66 NC_001493.1 + 5384 0.68 0.339655
Target:  5'- gCUCCUCCCGCCCaaguccGG-GaGCCCCa--- -3'
miRNA:   3'- aGGGGAGGGCGGG------CCaC-CGGGGcuuu -5'
3128 3' -66 NC_001493.1 + 120938 0.68 0.339655
Target:  5'- gCUCCUCCCGCCCaaguccGG-GaGCCCCa--- -3'
miRNA:   3'- aGGGGAGGGCGGG------CCaC-CGGGGcuuu -5'
3128 3' -66 NC_001493.1 + 30334 0.68 0.339655
Target:  5'- aCCCgaUCCC-CCCGaccagGGCCCCGAGu -3'
miRNA:   3'- aGGGg-AGGGcGGGCca---CCGGGGCUUu -5'
3128 3' -66 NC_001493.1 + 7683 0.67 0.361868
Target:  5'- -aCCCUCCC-CCCGG-GGaaCCCGAu- -3'
miRNA:   3'- agGGGAGGGcGGGCCaCCg-GGGCUuu -5'
3128 3' -66 NC_001493.1 + 123237 0.67 0.361868
Target:  5'- -aCCCUCCC-CCCGG-GGaaCCCGAu- -3'
miRNA:   3'- agGGGAGGGcGGGCCaCCg-GGGCUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.