Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3129 | 5' | -64.8 | NC_001493.1 | + | 26380 | 0.71 | 0.269068 |
Target: 5'- ---cGGGCCCGGGUuucgGCCCCagCCCGgUCGu -3' miRNA: 3'- gacaCCUGGGCCCG----UGGGG--GGGC-AGC- -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 94856 | 0.66 | 0.525044 |
Target: 5'- -cGUGGcACCCaccGGGacguaCCCCCgGUCGg -3' miRNA: 3'- gaCACC-UGGG---CCCgug--GGGGGgCAGC- -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 12888 | 0.66 | 0.506632 |
Target: 5'- -gGUGGAgagcgcccgauCCCGGuGagGCUCCCCCGUgGg -3' miRNA: 3'- gaCACCU-----------GGGCC-Cg-UGGGGGGGCAgC- -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 88635 | 0.66 | 0.506632 |
Target: 5'- -cGUGGGCCCGauCACCCCgUCCGcCu -3' miRNA: 3'- gaCACCUGGGCccGUGGGG-GGGCaGc -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 128442 | 0.66 | 0.506632 |
Target: 5'- -gGUGGAgagcgcccgauCCCGGuGagGCUCCCCCGUgGg -3' miRNA: 3'- gaCACCU-----------GGGCC-Cg-UGGGGGGGCAgC- -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 103249 | 0.68 | 0.387037 |
Target: 5'- gUGUGcGGCCUGGaUAUCCCCCCGg-- -3' miRNA: 3'- gACAC-CUGGGCCcGUGGGGGGGCagc -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 87848 | 0.66 | 0.525044 |
Target: 5'- ---cGGAccuacCCCGGGacCugCCCCCCG-CGg -3' miRNA: 3'- gacaCCU-----GGGCCC--GugGGGGGGCaGC- -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 59848 | 0.66 | 0.515805 |
Target: 5'- -aGUGGugUCGcaaaaGGCgGCCCCgUCGUCGa -3' miRNA: 3'- gaCACCugGGC-----CCG-UGGGGgGGCAGC- -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 118668 | 0.66 | 0.506632 |
Target: 5'- ---cGGACUCGGGaagaACCucaCCCCCGcCGa -3' miRNA: 3'- gacaCCUGGGCCCg---UGG---GGGGGCaGC- -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 106700 | 0.68 | 0.379224 |
Target: 5'- ---gGGACCCGGGCGuauuUCCCaCCCGa-- -3' miRNA: 3'- gacaCCUGGGCCCGU----GGGG-GGGCagc -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 30999 | 0.7 | 0.313791 |
Target: 5'- cCUGaagcUGGACCUGGuGCuCCCCccgaccaccggCCCGUCGa -3' miRNA: 3'- -GAC----ACCUGGGCC-CGuGGGG-----------GGGCAGC- -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 132256 | 0.69 | 0.327562 |
Target: 5'- ---cGGGCCUcucgcccugGGGCACCCUCCCGgUCc -3' miRNA: 3'- gacaCCUGGG---------CCCGUGGGGGGGC-AGc -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 3114 | 0.66 | 0.506632 |
Target: 5'- ---cGGACUCGGGaagaACCucaCCCCCGcCGa -3' miRNA: 3'- gacaCCUGGGCCCg---UGG---GGGGGCaGC- -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 87902 | 0.66 | 0.525044 |
Target: 5'- ---cGGAccuacCCCGGGacCugCCCCCCG-CGg -3' miRNA: 3'- gacaCCU-----GGGCCC--GugGGGGGGCaGC- -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 133047 | 0.68 | 0.411101 |
Target: 5'- -cGUGGGCCC-GGUACCCguCCCCcUUGa -3' miRNA: 3'- gaCACCUGGGcCCGUGGG--GGGGcAGC- -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 17493 | 0.68 | 0.411101 |
Target: 5'- -cGUGGGCCC-GGUACCCguCCCCcUUGa -3' miRNA: 3'- gaCACCUGGGcCCGUGGG--GGGGcAGC- -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 133141 | 0.68 | 0.410284 |
Target: 5'- --cUGGAacacgauCCCGGGCACgCCCgCGUUGc -3' miRNA: 3'- gacACCU-------GGGCCCGUGgGGGgGCAGC- -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 17587 | 0.68 | 0.410284 |
Target: 5'- --cUGGAacacgauCCCGGGCACgCCCgCGUUGc -3' miRNA: 3'- gacACCU-------GGGCCCGUGgGGGgGCAGC- -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 30420 | 0.76 | 0.123615 |
Target: 5'- --uUGGACCCGGGCACCuuuCCUCCGaUCa -3' miRNA: 3'- gacACCUGGGCCCGUGG---GGGGGC-AGc -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 91615 | 0.69 | 0.363919 |
Target: 5'- ---cGGuCgCGGGCGCaCCCUCCGUCu -3' miRNA: 3'- gacaCCuGgGCCCGUG-GGGGGGCAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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