miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31298 3' -44.9 NC_006623.1 + 47355 0.72 0.997179
Target:  5'- uGGGGGCGGAAGGAuaGGAAcgcagauUGGAA--GGg -3'
miRNA:   3'- -CCUCUGUCUUUCU--CCUU-------ACCUUaaCC- -5'
31298 3' -44.9 NC_006623.1 + 531 0.77 0.956945
Target:  5'- aGGAGACuGAuuGGGGAAUG--AUUGGg -3'
miRNA:   3'- -CCUCUGuCUuuCUCCUUACcuUAACC- -5'
31298 3' -44.9 NC_006623.1 + 114524 0.66 0.999996
Target:  5'- uGGGGACcGAuugcGGGGAGUGuGAuaaUGGg -3'
miRNA:   3'- -CCUCUGuCUuu--CUCCUUAC-CUua-ACC- -5'
31298 3' -44.9 NC_006623.1 + 122367 0.68 0.999944
Target:  5'- gGGAGAauUAG-AGGAGGcAAUGGAAg-GGa -3'
miRNA:   3'- -CCUCU--GUCuUUCUCC-UUACCUUaaCC- -5'
31298 3' -44.9 NC_006623.1 + 118021 0.68 0.999944
Target:  5'- cGAGAaugAGGAAGAGGA--GGAAgaGGa -3'
miRNA:   3'- cCUCUg--UCUUUCUCCUuaCCUUaaCC- -5'
31298 3' -44.9 NC_006623.1 + 89914 0.68 0.999944
Target:  5'- aGAGuCAGAGAGcauuaaGAcUGGAGUUGGa -3'
miRNA:   3'- cCUCuGUCUUUCuc----CUuACCUUAACC- -5'
31298 3' -44.9 NC_006623.1 + 114724 0.69 0.9999
Target:  5'- aGGAcGCugcgAGAGGGAGGGcgGGAAUUa- -3'
miRNA:   3'- -CCUcUG----UCUUUCUCCUuaCCUUAAcc -5'
31298 3' -44.9 NC_006623.1 + 23134 0.7 0.999643
Target:  5'- uGGAGAggacaGGAAAGAGGAAcacagauuUGG--UUGGa -3'
miRNA:   3'- -CCUCUg----UCUUUCUCCUU--------ACCuuAACC- -5'
31298 3' -44.9 NC_006623.1 + 138545 0.7 0.999643
Target:  5'- cGGAGugGguGAGGGGGGAgaGUGGAc--GGa -3'
miRNA:   3'- -CCUCugU--CUUUCUCCU--UACCUuaaCC- -5'
31298 3' -44.9 NC_006623.1 + 139699 0.71 0.998687
Target:  5'- gGGGGugGGAGGGAGGg--GGAGg--- -3'
miRNA:   3'- -CCUCugUCUUUCUCCuuaCCUUaacc -5'
31298 3' -44.9 NC_006623.1 + 137767 0.71 0.998404
Target:  5'- cGGAGuuAGuuGGGGGGccgaacggGGAGUUGGa -3'
miRNA:   3'- -CCUCugUCuuUCUCCUua------CCUUAACC- -5'
31298 3' -44.9 NC_006623.1 + 121372 0.71 0.99796
Target:  5'- cGGAGuCGGAggaaGAGcagccugggugccgGGGAGUGGAcUUGGg -3'
miRNA:   3'- -CCUCuGUCU----UUC--------------UCCUUACCUuAACC- -5'
31298 3' -44.9 NC_006623.1 + 740 1.14 0.019448
Target:  5'- uGGAGACAGAAAGAGGAAUGGAAUUGGc -3'
miRNA:   3'- -CCUCUGUCUUUCUCCUUACCUUAACC- -5'
31298 3' -44.9 NC_006623.1 + 880 0.83 0.744158
Target:  5'- cGGAGAgGGAGAuAGGAAUGGAAU-GGu -3'
miRNA:   3'- -CCUCUgUCUUUcUCCUUACCUUAaCC- -5'
31298 3' -44.9 NC_006623.1 + 124619 0.76 0.964521
Target:  5'- cGGAGGUAaaaauuuuGAGAGAGGAGUGGAAauauuuUUGGu -3'
miRNA:   3'- -CCUCUGU--------CUUUCUCCUUACCUU------AACC- -5'
31298 3' -44.9 NC_006623.1 + 112200 0.75 0.981573
Target:  5'- aGGGGACuGGGAGGGGAcgGGuc--GGa -3'
miRNA:   3'- -CCUCUGuCUUUCUCCUuaCCuuaaCC- -5'
31298 3' -44.9 NC_006623.1 + 109050 0.73 0.991584
Target:  5'- cGGAGACAGaAGAGGGGGAaGGcaacuaUGGc -3'
miRNA:   3'- -CCUCUGUC-UUUCUCCUUaCCuua---ACC- -5'
31298 3' -44.9 NC_006623.1 + 140240 0.71 0.99796
Target:  5'- cGGAGuCGGAggaaGAGcagccugggugccgGGGAGUGGAcUUGGg -3'
miRNA:   3'- -CCUCuGUCU----UUC--------------UCCUUACCUuAACC- -5'
31298 3' -44.9 NC_006623.1 + 123844 0.71 0.998404
Target:  5'- cGGAGuuAGuuGGGGGGccgaacggGGAGUUGGa -3'
miRNA:   3'- -CCUCugUCuuUCUCCUua------CCUUAACC- -5'
31298 3' -44.9 NC_006623.1 + 121913 0.71 0.998687
Target:  5'- gGGGGugGGAGGGAGGg--GGAGg--- -3'
miRNA:   3'- -CCUCugUCUUUCUCCuuaCCUUaacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.