miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31298 3' -44.9 NC_006623.1 + 111704 0.7 0.999395
Target:  5'- uGGAGAUAGAAgaacguaagagccgGGcGGGAagGGAAacUUGGg -3'
miRNA:   3'- -CCUCUGUCUU--------------UC-UCCUuaCCUU--AACC- -5'
31298 3' -44.9 NC_006623.1 + 1132 0.7 0.999549
Target:  5'- cGGGGGC-GAGAG-GGAuUGGAGgcGGu -3'
miRNA:   3'- -CCUCUGuCUUUCuCCUuACCUUaaCC- -5'
31298 3' -44.9 NC_006623.1 + 7966 0.7 0.999634
Target:  5'- uGGGGGCGGAcuauagggAGGAGGAucaugaggcucucGUGGAucuugcUGGg -3'
miRNA:   3'- -CCUCUGUCU--------UUCUCCU-------------UACCUua----ACC- -5'
31298 3' -44.9 NC_006623.1 + 123067 0.7 0.999643
Target:  5'- cGGAGugGguGAGGGGGGAgaGUGGAc--GGa -3'
miRNA:   3'- -CCUCugU--CUUUCUCCU--UACCUuaaCC- -5'
31298 3' -44.9 NC_006623.1 + 146888 0.69 0.9999
Target:  5'- aGGAcGCugcgAGAGGGAGGGcgGGAAUUa- -3'
miRNA:   3'- -CCUcUG----UCUUUCUCCUuaCCUUAAcc -5'
31298 3' -44.9 NC_006623.1 + 143591 0.68 0.999944
Target:  5'- cGAGAaugAGGAAGAGGA--GGAAgaGGa -3'
miRNA:   3'- cCUCUg--UCUUUCUCCUuaCCUUaaCC- -5'
31298 3' -44.9 NC_006623.1 + 139245 0.68 0.999944
Target:  5'- gGGAGAauUAG-AGGAGGcAAUGGAAg-GGa -3'
miRNA:   3'- -CCUCU--GUCuUUCUCC-UUACCUUaaCC- -5'
31298 3' -44.9 NC_006623.1 + 550 0.68 0.999969
Target:  5'- aGGGGCAGcaguAGAGGAcaGUGGAGa--- -3'
miRNA:   3'- cCUCUGUCuu--UCUCCU--UACCUUaacc -5'
31298 3' -44.9 NC_006623.1 + 52106 0.67 0.999984
Target:  5'- aGGAGAUAcuGGAGGGGAAUGcGuGUUGu -3'
miRNA:   3'- -CCUCUGUc-UUUCUCCUUAC-CuUAACc -5'
31298 3' -44.9 NC_006623.1 + 524 0.67 0.999994
Target:  5'- aGAGACGGGGAagaagcggagcGAGGuagGGAGUgUGGc -3'
miRNA:   3'- cCUCUGUCUUU-----------CUCCuuaCCUUA-ACC- -5'
31298 3' -44.9 NC_006623.1 + 147088 0.66 0.999996
Target:  5'- uGGGGACcGAuugcGGGGAGUGuGAuaaUGGg -3'
miRNA:   3'- -CCUCUGuCUuu--CUCCUUAC-CUua-ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.